Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL3A1P02461 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL3A1P02461 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
COL3A1P02461 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC23.52■■□□□ 1.36
COL3A1P02461 AL671883.3-201ENST00000603274 991 ntBASIC23.52■■□□□ 1.36
COL3A1P02461 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
COL3A1P02461 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC23.52■■□□□ 1.36
COL3A1P02461 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
COL3A1P02461 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
COL3A1P02461 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL3A1P02461 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC23.51■■□□□ 1.35
COL3A1P02461 AL031284.1-201ENST00000419297 478 ntBASIC23.51■■□□□ 1.35
COL3A1P02461 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL3A1P02461 AC073648.2-201ENST00000510116 352 ntBASIC23.51■■□□□ 1.35
COL3A1P02461 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.51■■□□□ 1.35
COL3A1P02461 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC23.51■■□□□ 1.35
COL3A1P02461 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC23.51■■□□□ 1.35
COL3A1P02461 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
COL3A1P02461 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC23.51■■□□□ 1.35
COL3A1P02461 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC23.51■■□□□ 1.35
COL3A1P02461 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
COL3A1P02461 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC23.5■■□□□ 1.35
COL3A1P02461 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC23.5■■□□□ 1.35
COL3A1P02461 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC23.5■■□□□ 1.35
COL3A1P02461 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC23.5■■□□□ 1.35
COL3A1P02461 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC23.5■■□□□ 1.35
COL3A1P02461 SRP19-202ENST00000445150 833 ntTSL 2 BASIC23.5■■□□□ 1.35
COL3A1P02461 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 AP001005.1-201ENST00000571755 1248 ntBASIC23.5■■□□□ 1.35
COL3A1P02461 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC23.5■■□□□ 1.35
COL3A1P02461 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 FAM215A-202ENST00000632077 792 ntBASIC23.5■■□□□ 1.35
COL3A1P02461 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC23.5■■□□□ 1.35
COL3A1P02461 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC23.5■■□□□ 1.35
COL3A1P02461 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC23.5■■□□□ 1.35
COL3A1P02461 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC23.5■■□□□ 1.35
COL3A1P02461 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC23.5■■□□□ 1.35
COL3A1P02461 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
COL3A1P02461 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC23.5■■□□□ 1.35
COL3A1P02461 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 KRT18P27-201ENST00000427733 1299 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 RPS2P1-201ENST00000434010 821 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 MTDHP4-201ENST00000600287 670 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 AC004817.3-201ENST00000602957 2129 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC23.49■■□□□ 1.35
COL3A1P02461 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC23.49■■□□□ 1.35
COL3A1P02461 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC23.49■■□□□ 1.35
COL3A1P02461 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC23.49■■□□□ 1.35
COL3A1P02461 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 AC003669.1-201ENST00000334569 611 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 AF186996.4-201ENST00000467186 377 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 RNPS1P1-201ENST00000507437 918 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 SLC25A1P1-201ENST00000528351 927 ntBASIC23.49■■□□□ 1.35
COL3A1P02461 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC23.49■■□□□ 1.35
COL3A1P02461 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 PXK-206ENST00000463280 2825 ntTSL 2 BASIC23.49■■□□□ 1.35
COL3A1P02461 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
COL3A1P02461 AC009336.1-201ENST00000608941 1553 ntBASIC23.48■■□□□ 1.35
COL3A1P02461 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC23.48■■□□□ 1.35
COL3A1P02461 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL3A1P02461 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
COL3A1P02461 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
COL3A1P02461 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
COL3A1P02461 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC23.48■■□□□ 1.35
COL3A1P02461 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
COL3A1P02461 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC23.48■■□□□ 1.35
COL3A1P02461 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC23.48■■□□□ 1.35
COL3A1P02461 RAB17-203ENST00000409576 466 ntTSL 3 BASIC23.48■■□□□ 1.35
COL3A1P02461 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC23.48■■□□□ 1.35
COL3A1P02461 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms