Protein–RNA interactions for Protein: O43395

PRPF3, U4/U6 small nuclear ribonucleoprotein Prp3, humanhuman

Known RBP Predictions only

Length 683 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3O43395 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.56■□□□□ 0.88
PRPF3O43395 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PRPF3O43395 CCS-201ENST00000310190 942 ntTSL 5 BASIC20.56■□□□□ 0.88
PRPF3O43395 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PRPF3O43395 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 COX5BP2-201ENST00000392354 334 ntBASIC20.56■□□□□ 0.88
PRPF3O43395 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 AC007967.3-201ENST00000434308 558 ntBASIC20.56■□□□□ 0.88
PRPF3O43395 CDV3-207ENST00000508481 661 ntTSL 3 BASIC20.56■□□□□ 0.88
PRPF3O43395 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.56■□□□□ 0.88
PRPF3O43395 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
PRPF3O43395 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
PRPF3O43395 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC20.56■□□□□ 0.88
PRPF3O43395 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.56■□□□□ 0.88
PRPF3O43395 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.56■□□□□ 0.88
PRPF3O43395 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PRPF3O43395 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
PRPF3O43395 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
PRPF3O43395 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.56■□□□□ 0.88
PRPF3O43395 PODN-203ENST00000395871 2744 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 REXO1L11P-201ENST00000620964 1927 ntBASIC20.55■□□□□ 0.88
PRPF3O43395 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 BX276092.7-203ENST00000637198 1536 ntBASIC20.55■□□□□ 0.88
PRPF3O43395 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.55■□□□□ 0.88
PRPF3O43395 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
PRPF3O43395 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF3O43395 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF3O43395 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF3O43395 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF3O43395 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PRPF3O43395 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
PRPF3O43395 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC20.55■□□□□ 0.88
PRPF3O43395 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PRPF3O43395 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC20.54■□□□□ 0.88
PRPF3O43395 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC20.54■□□□□ 0.88
PRPF3O43395 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.54■□□□□ 0.88
PRPF3O43395 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PRPF3O43395 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PRPF3O43395 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC20.54■□□□□ 0.88
PRPF3O43395 AC009533.2-201ENST00000543664 586 ntBASIC20.54■□□□□ 0.88
PRPF3O43395 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
PRPF3O43395 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PRPF3O43395 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.54■□□□□ 0.88
PRPF3O43395 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
PRPF3O43395 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 CD151-203ENST00000397421 1486 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
PRPF3O43395 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PRPF3O43395 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC20.54■□□□□ 0.88
PRPF3O43395 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC20.53■□□□□ 0.88
PRPF3O43395 NSUN5P1-202ENST00000421140 1535 ntBASIC20.53■□□□□ 0.88
PRPF3O43395 NSUN5P2-203ENST00000457352 1529 ntBASIC20.53■□□□□ 0.88
PRPF3O43395 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
PRPF3O43395 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC20.53■□□□□ 0.88
PRPF3O43395 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PRPF3O43395 PON3-205ENST00000451904 1053 ntTSL 3 BASIC20.53■□□□□ 0.88
PRPF3O43395 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC20.53■□□□□ 0.88
PRPF3O43395 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms