Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
CPSF4LA6NMK7 AL355312.1-201ENST00000407115 2176 ntBASIC16.54■□□□□ 0.24
CPSF4LA6NMK7 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
CPSF4LA6NMK7 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CPSF4LA6NMK7 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.54■□□□□ 0.24
CPSF4LA6NMK7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 LINC01568-207ENST00000641790 1380 ntBASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 DUTP2-201ENST00000519164 463 ntBASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 AL645608.8-201ENST00000606034 2086 ntBASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CPSF4LA6NMK7 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 AC141586.5-201ENST00000624546 2050 ntBASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 NARF-204ENST00000390006 1766 ntTSL 2 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
CPSF4LA6NMK7 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CPSF4LA6NMK7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 LINC00602-201ENST00000629776 2065 ntBASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 ECEL1P3-201ENST00000427961 737 ntBASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 PVRIG2P-201ENST00000435460 978 ntBASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 TMA16-209ENST00000513272 803 ntTSL 2 BASIC16.51■□□□□ 0.23
CPSF4LA6NMK7 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms