Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 PBK-203ENST00000522944 1499 ntTSL 2 BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 PRORSD1P-202ENST00000563365 2154 ntBASIC18.51■□□□□ 0.55
PCDH9Q9HC56 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PCDH9Q9HC56 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 LINC00167-201ENST00000530583 1419 ntBASIC18.5■□□□□ 0.55
PCDH9Q9HC56 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 LINC01238-205ENST00000567549 1107 ntBASIC18.5■□□□□ 0.55
PCDH9Q9HC56 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PCDH9Q9HC56 AC022898.2-201ENST00000616822 1312 ntBASIC18.49■□□□□ 0.55
PCDH9Q9HC56 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 AC079602.3-201ENST00000623931 403 ntBASIC18.49■□□□□ 0.55
PCDH9Q9HC56 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.49■□□□□ 0.55
PCDH9Q9HC56 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 AC133963.1-201ENST00000504166 1679 ntBASIC18.48■□□□□ 0.55
PCDH9Q9HC56 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 ZFYVE21-202ENST00000311141 1383 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 AC112907.2-201ENST00000448639 330 ntBASIC18.48■□□□□ 0.55
PCDH9Q9HC56 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC18.48■□□□□ 0.55
PCDH9Q9HC56 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms