Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 AC087499.1-201ENST00000418141 1075 ntBASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 AC012306.2-201ENST00000609350 630 ntBASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 AC080080.1-201ENST00000625121 2420 ntBASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 AL645608.8-201ENST00000606034 2086 ntBASIC18.29■□□□□ 0.52
TRIM56Q9BRZ2 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 NARF-204ENST00000390006 1766 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.28■□□□□ 0.52
TRIM56Q9BRZ2 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 AC128688.1-201ENST00000487626 519 ntBASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 AL157888.1-201ENST00000631930 593 ntBASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
TRIM56Q9BRZ2 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRIM56Q9BRZ2 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
TRIM56Q9BRZ2 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.27■□□□□ 0.51
TRIM56Q9BRZ2 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.27■□□□□ 0.51
TRIM56Q9BRZ2 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CEP83-AS1-201ENST00000623122 2482 ntBASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
TRIM56Q9BRZ2 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms