Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 KRT8P47-201ENST00000604727 1398 ntBASIC17.4■□□□□ 0.38
LMX1AQ8TE12 AC010460.3-201ENST00000511359 1579 ntBASIC17.4■□□□□ 0.38
LMX1AQ8TE12 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 AC096633.1-201ENST00000422446 749 ntBASIC17.4■□□□□ 0.38
LMX1AQ8TE12 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 CHEK2-202ENST00000348295 1771 ntTSL 5 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC17.4■□□□□ 0.38
LMX1AQ8TE12 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.39■□□□□ 0.38
LMX1AQ8TE12 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.38
LMX1AQ8TE12 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.38
LMX1AQ8TE12 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 KRT18P13-201ENST00000400056 1290 ntBASIC17.39■□□□□ 0.37
LMX1AQ8TE12 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 BX005266.1-201ENST00000473402 457 ntBASIC17.39■□□□□ 0.37
LMX1AQ8TE12 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 AC012640.2-201ENST00000561606 901 ntBASIC17.39■□□□□ 0.37
LMX1AQ8TE12 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LMX1AQ8TE12 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 AC104109.2-201ENST00000602919 1418 ntBASIC17.38■□□□□ 0.37
LMX1AQ8TE12 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 AP000974.1-201ENST00000623909 2387 ntBASIC17.38■□□□□ 0.37
LMX1AQ8TE12 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 AC098831.1-202ENST00000438821 336 ntBASIC17.38■□□□□ 0.37
LMX1AQ8TE12 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 CAND2-206ENST00000626378 333 ntTSL 5 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 PMS2P7-201ENST00000506558 1336 ntBASIC17.38■□□□□ 0.37
LMX1AQ8TE12 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LMX1AQ8TE12 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LMX1AQ8TE12 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms