Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 UPK3BP1-201ENST00000428678 509 ntBASIC17.5■□□□□ 0.39
VRK3Q8IV63 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 TPSP2-201ENST00000561760 610 ntBASIC17.5■□□□□ 0.39
VRK3Q8IV63 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 AC005336.2-201ENST00000593183 939 ntBASIC17.5■□□□□ 0.39
VRK3Q8IV63 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC17.5■□□□□ 0.39
VRK3Q8IV63 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
VRK3Q8IV63 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 AC092119.3-201ENST00000612618 583 ntBASIC17.49■□□□□ 0.39
VRK3Q8IV63 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC17.49■□□□□ 0.39
VRK3Q8IV63 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.49■□□□□ 0.39
VRK3Q8IV63 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
VRK3Q8IV63 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 DRAXINP1-201ENST00000437611 948 ntBASIC17.48■□□□□ 0.39
VRK3Q8IV63 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
VRK3Q8IV63 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
VRK3Q8IV63 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
VRK3Q8IV63 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 82.8 ms