Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 MIR662-201ENST00000384847 95 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 KRT18P48-201ENST00000434763 852 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 KRT18P65-201ENST00000439811 1286 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 SPDYE13P-201ENST00000445314 798 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 AC112907.2-201ENST00000448639 330 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 HOMER2P1-201ENST00000455653 964 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 VENTXP5-201ENST00000523979 775 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 RN7SL850P-201ENST00000579959 291 ntBASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
ZNF549Q6P9A3 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 AC022898.2-201ENST00000616822 1312 ntBASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 FAM8A6P-201ENST00000407496 1135 ntBASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 AC063952.2-201ENST00000498792 1227 ntBASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 KRT8P47-201ENST00000604727 1398 ntBASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.78■□□□□ 0.44
ZNF549Q6P9A3 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC17.77■□□□□ 0.44
ZNF549Q6P9A3 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
ZNF549Q6P9A3 OR6D1P-202ENST00000641007 5290 ntBASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms