Protein–RNA interactions for Protein: Q59EK9

RUNDC3A, RUN domain-containing protein 3A, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3AQ59EK9 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 AL121761.2-201ENST00000598007 1648 ntBASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 AP000525.1-201ENST00000608286 694 ntBASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 MME-217ENST00000616757 1315 ntTSL 5 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
RUNDC3AQ59EK9 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AL390955.1-201ENST00000428694 934 ntBASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AC008687.5-201ENST00000593746 558 ntBASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 AC084018.2-201ENST00000613093 2607 ntBASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
RUNDC3AQ59EK9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 AC024243.1-201ENST00000609234 778 ntBASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 LINC01451-201ENST00000623792 534 ntBASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
RUNDC3AQ59EK9 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms