Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC14.46□□□□□ -0.1
CX3CL1P78423 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CX3CL1P78423 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.1
CX3CL1P78423 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC14.46□□□□□ -0.1
CX3CL1P78423 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC14.46□□□□□ -0.1
CX3CL1P78423 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CX3CL1P78423 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CX3CL1P78423 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
CX3CL1P78423 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.1
CX3CL1P78423 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
CX3CL1P78423 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.45□□□□□ -0.1
CX3CL1P78423 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CX3CL1P78423 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 FAM210CP-201ENST00000445714 574 ntBASIC14.45□□□□□ -0.1
CX3CL1P78423 KRT18P38-201ENST00000449496 1282 ntBASIC14.45□□□□□ -0.1
CX3CL1P78423 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC14.45□□□□□ -0.1
CX3CL1P78423 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC14.45□□□□□ -0.1
CX3CL1P78423 LINC01238-205ENST00000567549 1107 ntBASIC14.45□□□□□ -0.1
CX3CL1P78423 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC14.45□□□□□ -0.1
CX3CL1P78423 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC14.45□□□□□ -0.1
CX3CL1P78423 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC14.45□□□□□ -0.1
CX3CL1P78423 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC14.45□□□□□ -0.1
CX3CL1P78423 REXO1L9P-201ENST00000604264 2108 ntBASIC14.45□□□□□ -0.1
CX3CL1P78423 LINC00896-202ENST00000609602 2128 ntBASIC14.45□□□□□ -0.1
CX3CL1P78423 AL096828.2-201ENST00000567259 1965 ntBASIC14.45□□□□□ -0.1
CX3CL1P78423 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
CX3CL1P78423 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC14.45□□□□□ -0.1
CX3CL1P78423 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC14.45□□□□□ -0.1
CX3CL1P78423 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
CX3CL1P78423 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
CX3CL1P78423 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 COPE-203ENST00000351079 907 ntTSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC14.44□□□□□ -0.1
CX3CL1P78423 AC092597.1-201ENST00000487352 616 ntBASIC14.44□□□□□ -0.1
CX3CL1P78423 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 AC022616.7-201ENST00000525383 220 ntBASIC14.44□□□□□ -0.1
CX3CL1P78423 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
CX3CL1P78423 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC14.44□□□□□ -0.1
CX3CL1P78423 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.44□□□□□ -0.1
CX3CL1P78423 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
CX3CL1P78423 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CX3CL1P78423 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
CX3CL1P78423 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.43□□□□□ -0.1
CX3CL1P78423 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.43□□□□□ -0.1
CX3CL1P78423 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC14.43□□□□□ -0.1
CX3CL1P78423 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
CX3CL1P78423 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC14.43□□□□□ -0.1
CX3CL1P78423 KIRREL3-AS3-201ENST00000404882 831 ntBASIC14.43□□□□□ -0.1
CX3CL1P78423 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC14.43□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms