Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CMC4P56277 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC13.33□□□□□ -0.27
CMC4P56277 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.27
CMC4P56277 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CMC4P56277 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC13.33□□□□□ -0.28
CMC4P56277 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC13.33□□□□□ -0.28
CMC4P56277 CD9-202ENST00000382515 1229 ntTSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 LINC00265-3P-201ENST00000447588 903 ntBASIC13.33□□□□□ -0.28
CMC4P56277 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC13.33□□□□□ -0.28
CMC4P56277 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC13.33□□□□□ -0.28
CMC4P56277 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC13.33□□□□□ -0.28
CMC4P56277 CIB2-208ENST00000560618 804 ntTSL 2 BASIC13.33□□□□□ -0.28
CMC4P56277 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC13.33□□□□□ -0.28
CMC4P56277 MIR3652-201ENST00000579335 131 ntBASIC13.33□□□□□ -0.28
CMC4P56277 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC13.33□□□□□ -0.28
CMC4P56277 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC13.33□□□□□ -0.28
CMC4P56277 AC138028.4-201ENST00000564984 1845 ntBASIC13.33□□□□□ -0.28
CMC4P56277 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC13.33□□□□□ -0.28
CMC4P56277 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CMC4P56277 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CMC4P56277 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CMC4P56277 AC233702.3-201ENST00000578656 1387 ntBASIC13.32□□□□□ -0.28
CMC4P56277 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 PNMA6E-201ENST00000445091 2192 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC13.32□□□□□ -0.28
CMC4P56277 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 AC132938.6-201ENST00000623828 1655 ntBASIC13.32□□□□□ -0.28
CMC4P56277 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC13.32□□□□□ -0.28
CMC4P56277 NUS1P1-201ENST00000446295 882 ntBASIC13.32□□□□□ -0.28
CMC4P56277 KRT17P6-201ENST00000453795 1220 ntBASIC13.32□□□□□ -0.28
CMC4P56277 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC13.32□□□□□ -0.28
CMC4P56277 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC13.32□□□□□ -0.28
CMC4P56277 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC13.32□□□□□ -0.28
CMC4P56277 TPSP2-201ENST00000561760 610 ntBASIC13.32□□□□□ -0.28
CMC4P56277 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC13.32□□□□□ -0.28
CMC4P56277 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 NPAP1P7-201ENST00000613027 823 ntBASIC13.32□□□□□ -0.28
CMC4P56277 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.32□□□□□ -0.28
CMC4P56277 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC13.32□□□□□ -0.28
CMC4P56277 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC13.32□□□□□ -0.28
CMC4P56277 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC13.32□□□□□ -0.28
CMC4P56277 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC13.32□□□□□ -0.28
CMC4P56277 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC13.32□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms