Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC16.86■□□□□ 0.29
RFX3P48380 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
RFX3P48380 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.86■□□□□ 0.29
RFX3P48380 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC16.86■□□□□ 0.29
RFX3P48380 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC16.86■□□□□ 0.29
RFX3P48380 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
RFX3P48380 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC16.86■□□□□ 0.29
RFX3P48380 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC16.86■□□□□ 0.29
RFX3P48380 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.85■□□□□ 0.29
RFX3P48380 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 COPE-203ENST00000351079 907 ntTSL 2 BASIC16.85■□□□□ 0.29
RFX3P48380 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 PVRIG2P-201ENST00000435460 978 ntBASIC16.85■□□□□ 0.29
RFX3P48380 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.85■□□□□ 0.29
RFX3P48380 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 AL136038.4-201ENST00000603606 1261 ntBASIC16.85■□□□□ 0.29
RFX3P48380 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.85■□□□□ 0.29
RFX3P48380 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
RFX3P48380 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.85■□□□□ 0.29
RFX3P48380 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
RFX3P48380 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC16.85■□□□□ 0.29
RFX3P48380 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.85■□□□□ 0.29
RFX3P48380 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 FAM8A6P-201ENST00000407496 1135 ntBASIC16.84■□□□□ 0.29
RFX3P48380 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RFX3P48380 AC112907.2-201ENST00000448639 330 ntBASIC16.84■□□□□ 0.29
RFX3P48380 KRT18P38-201ENST00000449496 1282 ntBASIC16.84■□□□□ 0.29
RFX3P48380 AC092597.1-201ENST00000487352 616 ntBASIC16.84■□□□□ 0.29
RFX3P48380 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.84■□□□□ 0.29
RFX3P48380 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.84■□□□□ 0.29
RFX3P48380 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.84■□□□□ 0.29
RFX3P48380 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 AC079602.3-201ENST00000623931 403 ntBASIC16.84■□□□□ 0.29
RFX3P48380 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
RFX3P48380 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
RFX3P48380 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.84■□□□□ 0.29
RFX3P48380 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
RFX3P48380 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms