Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
SHMT2P34897 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SHMT2P34897 PHGDH-209ENST00000641074 1780 ntBASIC17.53■□□□□ 0.4
SHMT2P34897 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.53■□□□□ 0.4
SHMT2P34897 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
SHMT2P34897 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SHMT2P34897 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.53■□□□□ 0.4
SHMT2P34897 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.53■□□□□ 0.4
SHMT2P34897 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.53■□□□□ 0.4
SHMT2P34897 NPAP1P7-201ENST00000613027 823 ntBASIC17.53■□□□□ 0.4
SHMT2P34897 AC009154.2-201ENST00000621177 724 ntBASIC17.53■□□□□ 0.4
SHMT2P34897 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.53■□□□□ 0.4
SHMT2P34897 PRODH-205ENST00000420436 2034 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SHMT2P34897 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
SHMT2P34897 LINC00167-201ENST00000530583 1419 ntBASIC17.53■□□□□ 0.4
SHMT2P34897 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC17.53■□□□□ 0.4
SHMT2P34897 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
SHMT2P34897 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC17.53■□□□□ 0.4
SHMT2P34897 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
SHMT2P34897 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
SHMT2P34897 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
SHMT2P34897 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 KRT18P1-202ENST00000452408 1331 ntBASIC17.52■□□□□ 0.4
SHMT2P34897 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.52■□□□□ 0.4
SHMT2P34897 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.52■□□□□ 0.4
SHMT2P34897 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC17.52■□□□□ 0.4
SHMT2P34897 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 KRT18P65-201ENST00000439811 1286 ntBASIC17.52■□□□□ 0.4
SHMT2P34897 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC17.52■□□□□ 0.4
SHMT2P34897 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC17.52■□□□□ 0.4
SHMT2P34897 NMU-205ENST00000511469 756 ntTSL 3 BASIC17.52■□□□□ 0.4
SHMT2P34897 AL592071.1-201ENST00000611956 408 ntBASIC17.52■□□□□ 0.4
SHMT2P34897 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC17.52■□□□□ 0.4
SHMT2P34897 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SHMT2P34897 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHMT2P34897 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.52■□□□□ 0.39
SHMT2P34897 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHMT2P34897 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.52■□□□□ 0.39
SHMT2P34897 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.52■□□□□ 0.39
SHMT2P34897 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC17.52■□□□□ 0.39
SHMT2P34897 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SHMT2P34897 PRORSD1P-202ENST00000563365 2154 ntBASIC17.52■□□□□ 0.39
SHMT2P34897 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SHMT2P34897 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SHMT2P34897 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 LINC00896-202ENST00000609602 2128 ntBASIC17.51■□□□□ 0.39
SHMT2P34897 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC17.51■□□□□ 0.39
SHMT2P34897 AC093010.1-201ENST00000473625 1624 ntBASIC17.51■□□□□ 0.39
SHMT2P34897 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SHMT2P34897 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC17.51■□□□□ 0.39
SHMT2P34897 AP002383.4-201ENST00000442518 975 ntBASIC17.51■□□□□ 0.39
SHMT2P34897 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC17.51■□□□□ 0.39
SHMT2P34897 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
SHMT2P34897 AP002414.4-201ENST00000589764 1148 ntBASIC17.51■□□□□ 0.39
SHMT2P34897 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC17.51■□□□□ 0.39
SHMT2P34897 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SHMT2P34897 AC009053.2-201ENST00000563701 2365 ntBASIC17.51■□□□□ 0.39
SHMT2P34897 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms