Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
HOXD11P31277 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
HOXD11P31277 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HOXD11P31277 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXD11P31277 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXD11P31277 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.2■□□□□ 0.66
HOXD11P31277 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 AC019072.1-201ENST00000604535 1551 ntBASIC19.19■□□□□ 0.66
HOXD11P31277 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXD11P31277 HMGCLL1-203ENST00000370850 1171 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXD11P31277 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXD11P31277 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXD11P31277 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXD11P31277 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 AC007274.1-201ENST00000439805 662 ntBASIC19.19■□□□□ 0.66
HOXD11P31277 USP9YP25-201ENST00000457708 443 ntBASIC19.19■□□□□ 0.66
HOXD11P31277 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXD11P31277 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 NAA50-206ENST00000493454 964 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXD11P31277 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.19■□□□□ 0.66
HOXD11P31277 LINC02515-201ENST00000503677 536 ntTSL 3 BASIC19.19■□□□□ 0.66
HOXD11P31277 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC19.19■□□□□ 0.66
HOXD11P31277 OPCML-IT2-201ENST00000533260 398 ntTSL 4 BASIC19.19■□□□□ 0.66
HOXD11P31277 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 AC233290.1-201ENST00000553021 1186 ntBASIC19.19■□□□□ 0.66
HOXD11P31277 AC007610.3-201ENST00000566879 934 ntBASIC19.19■□□□□ 0.66
HOXD11P31277 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 AC127496.7-201ENST00000625110 1798 ntBASIC19.19■□□□□ 0.66
HOXD11P31277 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
HOXD11P31277 CCNE2-202ENST00000396133 1361 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HOXD11P31277 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HOXD11P31277 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXD11P31277 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC19.18■□□□□ 0.66
HOXD11P31277 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXD11P31277 NALCN-202ENST00000376200 1126 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC19.18■□□□□ 0.66
HOXD11P31277 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC19.18■□□□□ 0.66
HOXD11P31277 SETP4-201ENST00000455717 868 ntBASIC19.18■□□□□ 0.66
HOXD11P31277 AP001619.2-201ENST00000458654 587 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXD11P31277 AC125618.1-201ENST00000472596 563 ntTSL 4 BASIC19.18■□□□□ 0.66
HOXD11P31277 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC19.18■□□□□ 0.66
HOXD11P31277 MTATP6P15-201ENST00000527233 835 ntBASIC19.18■□□□□ 0.66
HOXD11P31277 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.18■□□□□ 0.66
HOXD11P31277 AC243972.2-201ENST00000541653 991 ntBASIC19.18■□□□□ 0.66
HOXD11P31277 ABR-204ENST00000543210 1049 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXD11P31277 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.18■□□□□ 0.66
HOXD11P31277 AC087292.1-201ENST00000573371 512 ntTSL 5 BASIC19.18■□□□□ 0.66
HOXD11P31277 NT5C-210ENST00000582160 860 ntTSL 2 BASIC19.18■□□□□ 0.66
HOXD11P31277 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 AL365181.4-201ENST00000609800 547 ntBASIC19.18■□□□□ 0.66
HOXD11P31277 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC19.18■□□□□ 0.66
HOXD11P31277 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HOXD11P31277 AC010435.1-201ENST00000623353 1177 ntBASIC19.18■□□□□ 0.66
HOXD11P31277 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC19.18■□□□□ 0.66
HOXD11P31277 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 GYG1-210ENST00000484197 1563 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.18■□□□□ 0.66
HOXD11P31277 ZCCHC9-202ENST00000380199 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HOXD11P31277 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXD11P31277 RBMY1A3P-201ENST00000382670 1404 ntBASIC19.17■□□□□ 0.66
HOXD11P31277 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.17■□□□□ 0.66
HOXD11P31277 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
HOXD11P31277 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXD11P31277 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.17■□□□□ 0.66
HOXD11P31277 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXD11P31277 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXD11P31277 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HOXD11P31277 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HOXD11P31277 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
HOXD11P31277 RNU6-694P-201ENST00000364071 147 ntBASIC19.17■□□□□ 0.66
HOXD11P31277 MED22-202ENST00000371999 987 ntTSL 3 BASIC19.17■□□□□ 0.66
HOXD11P31277 GK-202ENST00000378941 458 ntTSL 3 BASIC19.17■□□□□ 0.66
HOXD11P31277 SKINT1L-201ENST00000401057 817 ntBASIC19.17■□□□□ 0.66
HOXD11P31277 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXD11P31277 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC19.17■□□□□ 0.66
HOXD11P31277 FAM197Y8-203ENST00000450145 560 ntBASIC19.17■□□□□ 0.66
HOXD11P31277 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms