Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC003669.1-201ENST00000334569 611 ntBASIC21.34■■□□□ 1.01
COL4A5P29400 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 PTMS-202ENST00000389462 773 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A5P29400 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.34■■□□□ 1.01
COL4A5P29400 SMN2-210ENST00000511812 867 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A5P29400 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 CYB561-216ENST00000582297 897 ntTSL 3 BASIC21.34■■□□□ 1.01
COL4A5P29400 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A5P29400 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A5P29400 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A5P29400 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
COL4A5P29400 ADM-207ENST00000530439 1839 ntTSL 2 BASIC21.34■■□□□ 1.01
COL4A5P29400 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
COL4A5P29400 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC21.33■■□□□ 1.01
COL4A5P29400 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.33■■□□□ 1.01
COL4A5P29400 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A5P29400 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A5P29400 HLA-J-203ENST00000494367 1087 ntBASIC21.33■■□□□ 1
COL4A5P29400 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.33■■□□□ 1
COL4A5P29400 GREM1-201ENST00000560677 623 ntTSL 4 BASIC21.33■■□□□ 1
COL4A5P29400 AL353135.1-201ENST00000606729 504 ntBASIC21.33■■□□□ 1
COL4A5P29400 AC105339.1-204ENST00000636249 355 ntBASIC21.33■■□□□ 1
COL4A5P29400 FBXL18-205ENST00000620087 2076 ntTSL 5 BASIC21.33■■□□□ 1
COL4A5P29400 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC21.33■■□□□ 1
COL4A5P29400 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A5P29400 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
COL4A5P29400 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.33■■□□□ 1
COL4A5P29400 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC21.32■■□□□ 1
COL4A5P29400 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
COL4A5P29400 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.32■■□□□ 1
COL4A5P29400 CD99-202ENST00000381180 530 ntTSL 2 BASIC21.32■■□□□ 1
COL4A5P29400 AC093520.2-201ENST00000561830 333 ntBASIC21.32■■□□□ 1
COL4A5P29400 PRR29-209ENST00000582540 967 ntTSL 2 BASIC21.32■■□□□ 1
COL4A5P29400 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A5P29400 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
COL4A5P29400 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A5P29400 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A5P29400 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC21.32■■□□□ 1
COL4A5P29400 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A5P29400 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC21.32■■□□□ 1
COL4A5P29400 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.32■■□□□ 1
COL4A5P29400 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.31■■□□□ 1
COL4A5P29400 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.31■■□□□ 1
COL4A5P29400 AP002414.1-201ENST00000391405 1147 ntBASIC21.31■■□□□ 1
COL4A5P29400 PAWRP1-201ENST00000451083 565 ntBASIC21.31■■□□□ 1
COL4A5P29400 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC21.31■■□□□ 1
COL4A5P29400 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC21.31■■□□□ 1
COL4A5P29400 AC068137.2-201ENST00000605408 478 ntBASIC21.31■■□□□ 1
COL4A5P29400 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC21.31■■□□□ 1
COL4A5P29400 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 AC100803.2-201ENST00000562459 1963 ntBASIC21.31■■□□□ 1
COL4A5P29400 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 RPL32-202ENST00000396953 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC21.31■■□□□ 1
COL4A5P29400 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 AC018445.3-201ENST00000624177 1945 ntBASIC21.31■■□□□ 1
COL4A5P29400 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 AC023141.5-201ENST00000458585 616 ntBASIC21.31■■□□□ 1
COL4A5P29400 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.31■■□□□ 1
COL4A5P29400 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC21.31■■□□□ 1
COL4A5P29400 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC21.31■■□□□ 1
COL4A5P29400 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.31■■□□□ 1
COL4A5P29400 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.31■■□□□ 1
COL4A5P29400 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.31■■□□□ 1
COL4A5P29400 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
COL4A5P29400 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A5P29400 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A5P29400 ACTG1P14-201ENST00000446382 1122 ntBASIC21.3■■□□□ 1
COL4A5P29400 AC074386.1-202ENST00000463561 864 ntBASIC21.3■■□□□ 1
COL4A5P29400 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC21.3■■□□□ 1
COL4A5P29400 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC21.3■■□□□ 1
COL4A5P29400 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC21.3■■□□□ 1
COL4A5P29400 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.3■■□□□ 1
COL4A5P29400 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.3■■□□□ 1
COL4A5P29400 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC21.3■■□□□ 1
COL4A5P29400 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A5P29400 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A5P29400 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
COL4A5P29400 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC21.29■■□□□ 1
COL4A5P29400 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A5P29400 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
COL4A5P29400 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC21.29■■□□□ 1
COL4A5P29400 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC21.29■■□□□ 1
COL4A5P29400 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms