Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC22.4■■□□□ 1.18
COL5A3P25940 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC22.4■■□□□ 1.18
COL5A3P25940 AL353135.1-201ENST00000606729 504 ntBASIC22.4■■□□□ 1.18
COL5A3P25940 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC22.39■■□□□ 1.18
COL5A3P25940 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC22.39■■□□□ 1.18
COL5A3P25940 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC22.39■■□□□ 1.18
COL5A3P25940 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC22.39■■□□□ 1.18
COL5A3P25940 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL5A3P25940 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.18
COL5A3P25940 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC22.39■■□□□ 1.18
COL5A3P25940 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL5A3P25940 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL5A3P25940 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
COL5A3P25940 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC22.39■■□□□ 1.17
COL5A3P25940 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL5A3P25940 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL5A3P25940 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL5A3P25940 BX276092.7-203ENST00000637198 1536 ntBASIC22.39■■□□□ 1.17
COL5A3P25940 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL5A3P25940 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
COL5A3P25940 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC22.39■■□□□ 1.17
COL5A3P25940 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC22.39■■□□□ 1.17
COL5A3P25940 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL5A3P25940 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
COL5A3P25940 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC22.38■■□□□ 1.17
COL5A3P25940 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC22.38■■□□□ 1.17
COL5A3P25940 FAM8A3P-201ENST00000427218 844 ntBASIC22.38■■□□□ 1.17
COL5A3P25940 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC22.38■■□□□ 1.17
COL5A3P25940 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC22.38■■□□□ 1.17
COL5A3P25940 CYB561-216ENST00000582297 897 ntTSL 3 BASIC22.38■■□□□ 1.17
COL5A3P25940 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 TMED1-207ENST00000591695 809 ntTSL 5 BASIC22.38■■□□□ 1.17
COL5A3P25940 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC22.38■■□□□ 1.17
COL5A3P25940 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
COL5A3P25940 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
COL5A3P25940 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC22.37■■□□□ 1.17
COL5A3P25940 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC22.37■■□□□ 1.17
COL5A3P25940 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC22.37■■□□□ 1.17
COL5A3P25940 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC22.37■■□□□ 1.17
COL5A3P25940 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 AC093512.1-201ENST00000617969 520 ntBASIC22.37■■□□□ 1.17
COL5A3P25940 AQP6-205ENST00000618286 829 ntTSL 5 BASIC22.37■■□□□ 1.17
COL5A3P25940 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 HARS-201ENST00000307633 1780 ntTSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
COL5A3P25940 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC22.37■■□□□ 1.17
COL5A3P25940 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC22.37■■□□□ 1.17
COL5A3P25940 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
COL5A3P25940 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC22.36■■□□□ 1.17
COL5A3P25940 CROCCP3-202ENST00000420820 1947 ntBASIC22.36■■□□□ 1.17
COL5A3P25940 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL5A3P25940 BCAR1-209ENST00000546196 1340 ntBASIC22.36■■□□□ 1.17
COL5A3P25940 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
COL5A3P25940 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC22.36■■□□□ 1.17
COL5A3P25940 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC22.36■■□□□ 1.17
COL5A3P25940 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL5A3P25940 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC22.36■■□□□ 1.17
COL5A3P25940 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC22.36■■□□□ 1.17
COL5A3P25940 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC22.36■■□□□ 1.17
COL5A3P25940 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC22.36■■□□□ 1.17
COL5A3P25940 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC22.36■■□□□ 1.17
COL5A3P25940 LSM12-202ENST00000585388 942 ntTSL 3 BASIC22.36■■□□□ 1.17
COL5A3P25940 AC022145.2-201ENST00000598203 171 ntBASIC22.36■■□□□ 1.17
COL5A3P25940 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL5A3P25940 GGTLC5P-201ENST00000617623 998 ntBASIC22.36■■□□□ 1.17
COL5A3P25940 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC22.36■■□□□ 1.17
COL5A3P25940 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL5A3P25940 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
COL5A3P25940 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL5A3P25940 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
COL5A3P25940 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
COL5A3P25940 AL096828.2-201ENST00000567259 1965 ntBASIC22.36■■□□□ 1.17
COL5A3P25940 AL590787.1-201ENST00000568856 1315 ntBASIC22.35■■□□□ 1.17
COL5A3P25940 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
COL5A3P25940 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms