Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 PVRIG2P-201ENST00000435460 978 ntBASIC17.48■□□□□ 0.39
PCNAP12004 BX664615.1-201ENST00000443558 458 ntBASIC17.48■□□□□ 0.39
PCNAP12004 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.48■□□□□ 0.39
PCNAP12004 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC17.48■□□□□ 0.39
PCNAP12004 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC17.48■□□□□ 0.39
PCNAP12004 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.48■□□□□ 0.39
PCNAP12004 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.48■□□□□ 0.39
PCNAP12004 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.48■□□□□ 0.39
PCNAP12004 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.48■□□□□ 0.39
PCNAP12004 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.48■□□□□ 0.39
PCNAP12004 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
PCNAP12004 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
PCNAP12004 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.47■□□□□ 0.39
PCNAP12004 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.47■□□□□ 0.39
PCNAP12004 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PCNAP12004 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.47■□□□□ 0.39
PCNAP12004 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC17.47■□□□□ 0.39
PCNAP12004 RASA4DP-201ENST00000460726 1199 ntBASIC17.47■□□□□ 0.39
PCNAP12004 TK2-213ENST00000563369 882 ntTSL 5 BASIC17.47■□□□□ 0.39
PCNAP12004 P4HB-223ENST00000576390 439 ntTSL 4 BASIC17.47■□□□□ 0.39
PCNAP12004 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.47■□□□□ 0.39
PCNAP12004 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC17.47■□□□□ 0.39
PCNAP12004 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.47■□□□□ 0.39
PCNAP12004 AC011558.1-201ENST00000623459 338 ntBASIC17.47■□□□□ 0.39
PCNAP12004 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC17.47■□□□□ 0.39
PCNAP12004 GNAS-203ENST00000306120 1878 ntBASIC17.47■□□□□ 0.39
PCNAP12004 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
PCNAP12004 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.47■□□□□ 0.39
PCNAP12004 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.47■□□□□ 0.39
PCNAP12004 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.47■□□□□ 0.39
PCNAP12004 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
PCNAP12004 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
PCNAP12004 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
PCNAP12004 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
PCNAP12004 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
PCNAP12004 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC17.46■□□□□ 0.39
PCNAP12004 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.46■□□□□ 0.39
PCNAP12004 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PCNAP12004 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 YBX1P2-201ENST00000489612 999 ntBASIC17.46■□□□□ 0.39
PCNAP12004 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC17.46■□□□□ 0.39
PCNAP12004 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.46■□□□□ 0.39
PCNAP12004 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
PCNAP12004 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC17.46■□□□□ 0.39
PCNAP12004 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC17.46■□□□□ 0.39
PCNAP12004 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.46■□□□□ 0.39
PCNAP12004 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
PCNAP12004 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.46■□□□□ 0.38
PCNAP12004 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCNAP12004 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
PCNAP12004 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
PCNAP12004 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.45■□□□□ 0.38
PCNAP12004 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 AC099398.1-201ENST00000567919 2776 ntBASIC17.45■□□□□ 0.38
PCNAP12004 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC17.45■□□□□ 0.38
PCNAP12004 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
PCNAP12004 AC117947.1-201ENST00000427448 529 ntBASIC17.45■□□□□ 0.38
PCNAP12004 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
PCNAP12004 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.45■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms