Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
FREM3P0C091 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
FREM3P0C091 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC16.25■□□□□ 0.19
FREM3P0C091 LSM5-204ENST00000409909 740 ntTSL 2 BASIC16.25■□□□□ 0.19
FREM3P0C091 KLF4P1-201ENST00000412782 1185 ntBASIC16.25■□□□□ 0.19
FREM3P0C091 AC096633.1-201ENST00000422446 749 ntBASIC16.25■□□□□ 0.19
FREM3P0C091 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.25■□□□□ 0.19
FREM3P0C091 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.25■□□□□ 0.19
FREM3P0C091 REXO1L9P-201ENST00000604264 2108 ntBASIC16.25■□□□□ 0.19
FREM3P0C091 REXO1L6P-202ENST00000619970 1078 ntBASIC16.25■□□□□ 0.19
FREM3P0C091 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC16.25■□□□□ 0.19
FREM3P0C091 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
FREM3P0C091 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.25■□□□□ 0.19
FREM3P0C091 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC16.25■□□□□ 0.19
FREM3P0C091 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
FREM3P0C091 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.25■□□□□ 0.19
FREM3P0C091 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.25■□□□□ 0.19
FREM3P0C091 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.25■□□□□ 0.19
FREM3P0C091 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC16.25■□□□□ 0.19
FREM3P0C091 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.25■□□□□ 0.19
FREM3P0C091 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.25■□□□□ 0.19
FREM3P0C091 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
FREM3P0C091 AC138028.4-201ENST00000564984 1845 ntBASIC16.25■□□□□ 0.19
FREM3P0C091 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.25■□□□□ 0.19
FREM3P0C091 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
FREM3P0C091 AC134043.2-201ENST00000624206 2238 ntBASIC16.25■□□□□ 0.19
FREM3P0C091 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
FREM3P0C091 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
FREM3P0C091 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC16.24■□□□□ 0.19
FREM3P0C091 FOSL1P1-201ENST00000511041 816 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 AF238378.1-201ENST00000526806 358 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.24■□□□□ 0.19
FREM3P0C091 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC16.24■□□□□ 0.19
FREM3P0C091 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.24■□□□□ 0.19
FREM3P0C091 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 AC008764.6-201ENST00000595909 2069 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC16.24■□□□□ 0.19
FREM3P0C091 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 AC004870.1-201ENST00000315132 882 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 NUS1P2-201ENST00000417358 873 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 KRT18P65-201ENST00000439811 1286 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 MTCL1P1-201ENST00000446207 792 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 AC096582.2-201ENST00000510860 516 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 AC008608.2-201ENST00000606089 416 ntBASIC16.24■□□□□ 0.19
FREM3P0C091 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC16.24■□□□□ 0.19
FREM3P0C091 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.24■□□□□ 0.19
FREM3P0C091 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
FREM3P0C091 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.23■□□□□ 0.19
FREM3P0C091 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 FAM72C-201ENST00000369175 1658 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
FREM3P0C091 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
FREM3P0C091 AC100803.2-201ENST00000562459 1963 ntBASIC16.23■□□□□ 0.19
FREM3P0C091 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
FREM3P0C091 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms