Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A1P02462 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A1P02462 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A1P02462 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
COL4A1P02462 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
COL4A1P02462 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC21.77■■□□□ 1.07
COL4A1P02462 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
COL4A1P02462 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
COL4A1P02462 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
COL4A1P02462 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A1P02462 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A1P02462 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC21.76■■□□□ 1.07
COL4A1P02462 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.76■■□□□ 1.07
COL4A1P02462 AC004967.1-201ENST00000453589 447 ntBASIC21.76■■□□□ 1.07
COL4A1P02462 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC21.76■■□□□ 1.07
COL4A1P02462 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A1P02462 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A1P02462 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC21.76■■□□□ 1.07
COL4A1P02462 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 NCF1C-201ENST00000438382 1427 ntBASIC21.76■■□□□ 1.07
COL4A1P02462 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC21.76■■□□□ 1.07
COL4A1P02462 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 TNXA-203ENST00000507684 2038 ntBASIC21.76■■□□□ 1.07
COL4A1P02462 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
COL4A1P02462 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.76■■□□□ 1.07
COL4A1P02462 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC21.76■■□□□ 1.07
COL4A1P02462 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 GGCT-205ENST00000409436 954 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A1P02462 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 URGCP-206ENST00000446958 365 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A1P02462 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 AC002347.1-201ENST00000569543 541 ntBASIC21.75■■□□□ 1.07
COL4A1P02462 MIR1199-201ENST00000621445 119 ntBASIC21.75■■□□□ 1.07
COL4A1P02462 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A1P02462 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
COL4A1P02462 RPS8P6-201ENST00000426177 609 ntBASIC21.75■■□□□ 1.07
COL4A1P02462 ARTN-206ENST00000472435 402 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A1P02462 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A1P02462 AC109462.3-201ENST00000573934 613 ntBASIC21.75■■□□□ 1.07
COL4A1P02462 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC21.75■■□□□ 1.07
COL4A1P02462 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.75■■□□□ 1.07
COL4A1P02462 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC21.75■■□□□ 1.07
COL4A1P02462 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL4A1P02462 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A1P02462 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A1P02462 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A1P02462 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
COL4A1P02462 BEX3-201ENST00000361298 921 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A1P02462 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A1P02462 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A1P02462 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC21.74■■□□□ 1.07
COL4A1P02462 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
COL4A1P02462 PMS2P2-201ENST00000425039 1128 ntBASIC21.74■■□□□ 1.07
COL4A1P02462 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC21.74■■□□□ 1.07
COL4A1P02462 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A1P02462 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC21.74■■□□□ 1.07
COL4A1P02462 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A1P02462 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
COL4A1P02462 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
COL4A1P02462 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.73■■□□□ 1.07
COL4A1P02462 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL4A1P02462 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.73■■□□□ 1.07
COL4A1P02462 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC21.73■■□□□ 1.07
COL4A1P02462 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
COL4A1P02462 AL020989.1-201ENST00000422979 469 ntBASIC21.73■■□□□ 1.07
COL4A1P02462 HCG4B-203ENST00000450128 991 ntBASIC21.73■■□□□ 1.07
COL4A1P02462 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC21.73■■□□□ 1.07
COL4A1P02462 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.73■■□□□ 1.07
COL4A1P02462 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.73■■□□□ 1.07
COL4A1P02462 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC21.73■■□□□ 1.07
COL4A1P02462 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC21.73■■□□□ 1.07
COL4A1P02462 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
COL4A1P02462 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms