Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC022898.2-201ENST00000616822 1312 ntBASIC21.45■■□□□ 1.02
COL1A1P02452 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
COL1A1P02452 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
COL1A1P02452 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.45■■□□□ 1.02
COL1A1P02452 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
COL1A1P02452 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
COL1A1P02452 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
COL1A1P02452 IMP4-203ENST00000409935 958 ntTSL 5 BASIC21.45■■□□□ 1.02
COL1A1P02452 KRT18P27-201ENST00000427733 1299 ntBASIC21.45■■□□□ 1.02
COL1A1P02452 DNAJB3-201ENST00000446806 729 ntBASIC21.45■■□□□ 1.02
COL1A1P02452 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC21.45■■□□□ 1.02
COL1A1P02452 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC21.45■■□□□ 1.02
COL1A1P02452 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC21.45■■□□□ 1.02
COL1A1P02452 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL1A1P02452 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL1A1P02452 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
COL1A1P02452 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC21.45■■□□□ 1.02
COL1A1P02452 AC073592.5-201ENST00000624854 528 ntBASIC21.45■■□□□ 1.02
COL1A1P02452 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
COL1A1P02452 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC21.44■■□□□ 1.02
COL1A1P02452 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
COL1A1P02452 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC21.44■■□□□ 1.02
COL1A1P02452 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.44■■□□□ 1.02
COL1A1P02452 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
COL1A1P02452 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC21.44■■□□□ 1.02
COL1A1P02452 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 YBX2P1-201ENST00000394192 760 ntBASIC21.44■■□□□ 1.02
COL1A1P02452 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21.44■■□□□ 1.02
COL1A1P02452 SRP19-202ENST00000445150 833 ntTSL 2 BASIC21.44■■□□□ 1.02
COL1A1P02452 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC21.44■■□□□ 1.02
COL1A1P02452 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC21.44■■□□□ 1.02
COL1A1P02452 RNA5SP415-201ENST00000517246 115 ntBASIC21.44■■□□□ 1.02
COL1A1P02452 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
COL1A1P02452 TMED1-207ENST00000591695 809 ntTSL 5 BASIC21.44■■□□□ 1.02
COL1A1P02452 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC21.44■■□□□ 1.02
COL1A1P02452 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
COL1A1P02452 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
COL1A1P02452 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
COL1A1P02452 PKD1P6-201ENST00000343738 4769 ntBASIC21.44■■□□□ 1.02
COL1A1P02452 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
COL1A1P02452 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC21.43■■□□□ 1.02
COL1A1P02452 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.43■■□□□ 1.02
COL1A1P02452 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC21.43■■□□□ 1.02
COL1A1P02452 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC21.43■■□□□ 1.02
COL1A1P02452 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC21.43■■□□□ 1.02
COL1A1P02452 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC21.43■■□□□ 1.02
COL1A1P02452 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC21.43■■□□□ 1.02
COL1A1P02452 URGCP-206ENST00000446958 365 ntTSL 2 BASIC21.43■■□□□ 1.02
COL1A1P02452 HS6ST1P1-201ENST00000481504 1234 ntBASIC21.43■■□□□ 1.02
COL1A1P02452 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC21.43■■□□□ 1.02
COL1A1P02452 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.43■■□□□ 1.02
COL1A1P02452 AC055717.3-201ENST00000622967 595 ntBASIC21.43■■□□□ 1.02
COL1A1P02452 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC21.43■■□□□ 1.02
COL1A1P02452 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC21.43■■□□□ 1.02
COL1A1P02452 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
COL1A1P02452 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL1A1P02452 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL1A1P02452 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL1A1P02452 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.42■■□□□ 1.02
COL1A1P02452 HNRNPA1P28-201ENST00000424481 961 ntBASIC21.42■■□□□ 1.02
COL1A1P02452 PMS2P2-201ENST00000425039 1128 ntBASIC21.42■■□□□ 1.02
COL1A1P02452 LAGE3P1-201ENST00000425356 484 ntBASIC21.42■■□□□ 1.02
COL1A1P02452 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC21.42■■□□□ 1.02
COL1A1P02452 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC21.42■■□□□ 1.02
COL1A1P02452 RPS29-206ENST00000557111 488 ntTSL 2 BASIC21.42■■□□□ 1.02
COL1A1P02452 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC21.42■■□□□ 1.02
COL1A1P02452 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL1A1P02452 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
COL1A1P02452 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL1A1P02452 AL020996.1-203ENST00000536896 2307 ntBASIC21.42■■□□□ 1.02
COL1A1P02452 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
COL1A1P02452 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
COL1A1P02452 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC21.41■■□□□ 1.02
COL1A1P02452 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
COL1A1P02452 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms