Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.52■□□□□ 0.4
SIX3O95343 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC17.52■□□□□ 0.4
SIX3O95343 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC17.52■□□□□ 0.4
SIX3O95343 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC17.52■□□□□ 0.4
SIX3O95343 AC079602.3-201ENST00000623931 403 ntBASIC17.52■□□□□ 0.4
SIX3O95343 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC17.52■□□□□ 0.4
SIX3O95343 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
SIX3O95343 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SIX3O95343 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX3O95343 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX3O95343 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX3O95343 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
SIX3O95343 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
SIX3O95343 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 AC022898.2-201ENST00000616822 1312 ntBASIC17.51■□□□□ 0.39
SIX3O95343 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX3O95343 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX3O95343 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SIX3O95343 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC17.51■□□□□ 0.39
SIX3O95343 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.51■□□□□ 0.39
SIX3O95343 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 RASA4DP-201ENST00000460726 1199 ntBASIC17.51■□□□□ 0.39
SIX3O95343 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
SIX3O95343 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX3O95343 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX3O95343 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.51■□□□□ 0.39
SIX3O95343 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.51■□□□□ 0.39
SIX3O95343 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.51■□□□□ 0.39
SIX3O95343 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SIX3O95343 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX3O95343 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.5■□□□□ 0.39
SIX3O95343 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 AC009949.1-201ENST00000623048 1830 ntBASIC17.5■□□□□ 0.39
SIX3O95343 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 HES2-202ENST00000377836 507 ntTSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC17.5■□□□□ 0.39
SIX3O95343 AC034232.1-201ENST00000506026 1064 ntBASIC17.5■□□□□ 0.39
SIX3O95343 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 AL441883.1-201ENST00000566170 1045 ntBASIC17.5■□□□□ 0.39
SIX3O95343 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
SIX3O95343 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC17.5■□□□□ 0.39
SIX3O95343 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SIX3O95343 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC17.49■□□□□ 0.39
SIX3O95343 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.49■□□□□ 0.39
SIX3O95343 CRYL1-202ENST00000382812 1581 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SIX3O95343 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SIX3O95343 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
SIX3O95343 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms