Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS4BO75351 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS4BO75351 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.59■□□□□ 0.41
VPS4BO75351 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VPS4BO75351 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VPS4BO75351 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
VPS4BO75351 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 AC005332.1-201ENST00000577698 1310 ntBASIC17.59■□□□□ 0.41
VPS4BO75351 GGT1-205ENST00000403838 1033 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC17.59■□□□□ 0.41
VPS4BO75351 KRT18P23-201ENST00000435622 1283 ntBASIC17.59■□□□□ 0.41
VPS4BO75351 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.59■□□□□ 0.41
VPS4BO75351 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VPS4BO75351 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.59■□□□□ 0.41
VPS4BO75351 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.59■□□□□ 0.41
VPS4BO75351 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS4BO75351 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS4BO75351 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VPS4BO75351 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS4BO75351 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.58■□□□□ 0.41
VPS4BO75351 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS4BO75351 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.58■□□□□ 0.41
VPS4BO75351 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.41
VPS4BO75351 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.41
VPS4BO75351 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
VPS4BO75351 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.58■□□□□ 0.4
VPS4BO75351 MIR3180-4-201ENST00000582223 153 ntBASIC17.58■□□□□ 0.4
VPS4BO75351 AC116407.4-201ENST00000623319 1061 ntBASIC17.58■□□□□ 0.4
VPS4BO75351 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
VPS4BO75351 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VPS4BO75351 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.58■□□□□ 0.4
VPS4BO75351 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS4BO75351 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS4BO75351 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS4BO75351 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC17.57■□□□□ 0.4
VPS4BO75351 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.57■□□□□ 0.4
VPS4BO75351 VENTXP5-201ENST00000523979 775 ntBASIC17.57■□□□□ 0.4
VPS4BO75351 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
VPS4BO75351 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
VPS4BO75351 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
VPS4BO75351 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VPS4BO75351 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC17.57■□□□□ 0.4
VPS4BO75351 AC092338.2-201ENST00000568827 1415 ntBASIC17.56■□□□□ 0.4
VPS4BO75351 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4BO75351 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VPS4BO75351 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.56■□□□□ 0.4
VPS4BO75351 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.56■□□□□ 0.4
VPS4BO75351 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC17.56■□□□□ 0.4
VPS4BO75351 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VPS4BO75351 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VPS4BO75351 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms