Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC19.19■□□□□ 0.66
FOXN3O00409 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.19■□□□□ 0.66
FOXN3O00409 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC19.19■□□□□ 0.66
FOXN3O00409 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 AC005332.3-201ENST00000589904 676 ntBASIC19.19■□□□□ 0.66
FOXN3O00409 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
FOXN3O00409 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
FOXN3O00409 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXN3O00409 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC19.18■□□□□ 0.66
FOXN3O00409 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXN3O00409 TMPOP1-202ENST00000424642 1267 ntBASIC19.18■□□□□ 0.66
FOXN3O00409 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXN3O00409 LTBR-211ENST00000543190 785 ntTSL 3 BASIC19.18■□□□□ 0.66
FOXN3O00409 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXN3O00409 GPR32P1-201ENST00000601788 811 ntBASIC19.18■□□□□ 0.66
FOXN3O00409 AC083849.1-201ENST00000615227 514 ntBASIC19.18■□□□□ 0.66
FOXN3O00409 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC19.18■□□□□ 0.66
FOXN3O00409 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXN3O00409 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
FOXN3O00409 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.18■□□□□ 0.66
FOXN3O00409 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.18■□□□□ 0.66
FOXN3O00409 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC19.18■□□□□ 0.66
FOXN3O00409 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
FOXN3O00409 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
FOXN3O00409 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
FOXN3O00409 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC19.18■□□□□ 0.66
FOXN3O00409 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
FOXN3O00409 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
FOXN3O00409 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXN3O00409 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC19.17■□□□□ 0.66
FOXN3O00409 GUK1-204ENST00000366721 689 ntTSL 3 BASIC19.17■□□□□ 0.66
FOXN3O00409 AC112698.1-201ENST00000510299 916 ntBASIC19.17■□□□□ 0.66
FOXN3O00409 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXN3O00409 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.17■□□□□ 0.66
FOXN3O00409 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 LTB4R2-202ENST00000528054 3092 ntBASIC19.17■□□□□ 0.66
FOXN3O00409 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
FOXN3O00409 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN3O00409 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
FOXN3O00409 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.16■□□□□ 0.66
FOXN3O00409 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN3O00409 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN3O00409 AC068472.1-201ENST00000474589 881 ntBASIC19.16■□□□□ 0.66
FOXN3O00409 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.16■□□□□ 0.66
FOXN3O00409 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC19.16■□□□□ 0.66
FOXN3O00409 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.16■□□□□ 0.66
FOXN3O00409 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN3O00409 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
FOXN3O00409 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
FOXN3O00409 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 SNAP91-201ENST00000195649 4434 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
FOXN3O00409 SNAP91-204ENST00000369694 4449 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
FOXN3O00409 GPRC5B-201ENST00000300571 5213 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN3O00409 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
FOXN3O00409 AC139713.2-201ENST00000641328 2723 ntBASIC19.16■□□□□ 0.66
FOXN3O00409 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC19.16■□□□□ 0.66
FOXN3O00409 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN3O00409 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN3O00409 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN3O00409 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
FOXN3O00409 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN3O00409 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN3O00409 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN3O00409 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
FOXN3O00409 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
FOXN3O00409 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.15■□□□□ 0.66
FOXN3O00409 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms