Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 AP001005.1-201ENST00000571755 1248 ntBASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 AC116407.2-201ENST00000613639 860 ntBASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 AC135776.1-201ENST00000319817 2481 ntBASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 AC122714.2-201ENST00000502787 707 ntBASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 FOXP1-214ENST00000493089 2703 ntAPPRIS ALT1 TSL 2 BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 PTCHD3-202ENST00000622555 1720 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
C1QTNF3-AMACRE9PGA6 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 FLYWCH1P1-201ENST00000460917 1874 ntBASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 AC093909.1-201ENST00000504731 1122 ntBASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 HLA-A-201ENST00000376802 1334 ntBASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
C1QTNF3-AMACRE9PGA6 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms