Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 LINC01568-207ENST00000641790 1380 ntBASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 HES2-202ENST00000377836 507 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 USF2-205ENST00000594064 1179 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 AC116407.2-201ENST00000613639 860 ntBASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 AC141257.4-201ENST00000634557 245 ntBASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 AC136944.6-201ENST00000634818 245 ntBASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 CLN6-221ENST00000637494 765 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 HLA-J-201ENST00000462773 1622 ntBASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PCDHA3Q9Y5H8 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 KRT89P-201ENST00000620027 1478 ntBASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 AC009949.1-201ENST00000623048 1830 ntBASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CD81-212ENST00000526072 1172 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 GCSHP2-201ENST00000560971 527 ntBASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 AL138966.2-201ENST00000621997 464 ntBASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.73■□□□□ 0.59
PCDHA3Q9Y5H8 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 REXO1L11P-201ENST00000620964 1927 ntBASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 AP001094.4-201ENST00000579008 2176 ntBASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 TMA16-209ENST00000513272 803 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 LINC01451-201ENST00000623792 534 ntBASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 AC022211.2-201ENST00000585075 2527 ntBASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 KRT18P22-201ENST00000402024 1347 ntBASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PCDHA3Q9Y5H8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
PCDHA3Q9Y5H8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.71■□□□□ 0.59
PCDHA3Q9Y5H8 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
PCDHA3Q9Y5H8 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
PCDHA3Q9Y5H8 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms