Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 SDHAP2-201ENST00000455183 2001 ntBASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX2IPQ9Y2D8 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 AL031284.1-201ENST00000419297 478 ntBASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 SCARNA2-201ENST00000458748 420 ntBASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 GPALPP1-207ENST00000611650 899 ntBASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX2IPQ9Y2D8 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 NEFHP1-201ENST00000412845 2629 ntBASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 RCN1P2-201ENST00000398357 915 ntBASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 MTCL1P1-201ENST00000446207 792 ntBASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
SSX2IPQ9Y2D8 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
SSX2IPQ9Y2D8 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
SSX2IPQ9Y2D8 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.67
SSX2IPQ9Y2D8 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.67
SSX2IPQ9Y2D8 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 AL024508.2-201ENST00000607749 1894 ntBASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 RPS2P28-201ENST00000314255 741 ntBASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 PMS2P1-201ENST00000431037 1228 ntBASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 AC073648.2-201ENST00000510116 352 ntBASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 GZMM-202ENST00000592501 941 ntTSL 3 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 AC005336.2-201ENST00000593183 939 ntBASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 AL355877.3-201ENST00000622820 899 ntBASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
SSX2IPQ9Y2D8 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms