Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC15.88■□□□□ 0.13
MMP28Q9H239 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
MMP28Q9H239 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 AC133681.1-201ENST00000465482 601 ntBASIC15.88■□□□□ 0.13
MMP28Q9H239 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC15.88■□□□□ 0.13
MMP28Q9H239 C1QBPP2-201ENST00000528754 825 ntBASIC15.88■□□□□ 0.13
MMP28Q9H239 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC15.88■□□□□ 0.13
MMP28Q9H239 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC15.88■□□□□ 0.13
MMP28Q9H239 AC124016.1-201ENST00000609552 612 ntBASIC15.88■□□□□ 0.13
MMP28Q9H239 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
MMP28Q9H239 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC15.88■□□□□ 0.13
MMP28Q9H239 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC15.88■□□□□ 0.13
MMP28Q9H239 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
MMP28Q9H239 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
MMP28Q9H239 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.88■□□□□ 0.13
MMP28Q9H239 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
MMP28Q9H239 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC15.87■□□□□ 0.13
MMP28Q9H239 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC15.87■□□□□ 0.13
MMP28Q9H239 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
MMP28Q9H239 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 CIRBP-202ENST00000413636 1606 ntTSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC15.87■□□□□ 0.13
MMP28Q9H239 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 ISG20-202ENST00000379224 540 ntTSL 3 BASIC15.87■□□□□ 0.13
MMP28Q9H239 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 SERF2-207ENST00000409614 582 ntTSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 RPPH1-201ENST00000516869 333 ntBASIC15.87■□□□□ 0.13
MMP28Q9H239 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC15.87■□□□□ 0.13
MMP28Q9H239 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC15.87■□□□□ 0.13
MMP28Q9H239 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC15.87■□□□□ 0.13
MMP28Q9H239 AL356309.3-201ENST00000624132 1934 ntBASIC15.87■□□□□ 0.13
MMP28Q9H239 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
MMP28Q9H239 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 LRRC27-201ENST00000344079 1809 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
MMP28Q9H239 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
MMP28Q9H239 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 MST1L-201ENST00000442552 2185 ntBASIC15.86■□□□□ 0.13
MMP28Q9H239 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 CES3-203ENST00000543856 3178 ntTSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
MMP28Q9H239 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC15.86■□□□□ 0.13
MMP28Q9H239 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.86■□□□□ 0.13
MMP28Q9H239 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
MMP28Q9H239 AC106886.4-201ENST00000623557 2502 ntBASIC15.86■□□□□ 0.13
MMP28Q9H239 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
MMP28Q9H239 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 AC110285.5-201ENST00000611501 352 ntBASIC15.86■□□□□ 0.13
MMP28Q9H239 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
MMP28Q9H239 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
MMP28Q9H239 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.86■□□□□ 0.13
MMP28Q9H239 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
MMP28Q9H239 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms