Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 LINC00304-203ENST00000565008 1864 ntBASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
CCDC28BQ9BUN5 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.38
CCDC28BQ9BUN5 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.46■□□□□ 0.38
CCDC28BQ9BUN5 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC28BQ9BUN5 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.38
CCDC28BQ9BUN5 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AC116562.2-201ENST00000507042 360 ntBASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 HLA-J-201ENST00000462773 1622 ntBASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AC100803.2-201ENST00000562459 1963 ntBASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AC132938.6-201ENST00000623828 1655 ntBASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AC022898.2-201ENST00000616822 1312 ntBASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC17.45■□□□□ 0.38
CCDC28BQ9BUN5 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 FAM197Y1-201ENST00000421178 764 ntBASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 C1QBPP2-201ENST00000528754 825 ntBASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 WWOX-216ENST00000569818 525 ntBASIC17.44■□□□□ 0.38
CCDC28BQ9BUN5 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms