Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 RPL18-209ENST00000550645 463 ntTSL 5 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
PAAF1Q9BRP4 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 PMPCAP1-201ENST00000508114 1576 ntBASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 SIRPAP1-201ENST00000448467 1770 ntBASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 AP000997.3-201ENST00000623333 2250 ntBASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 AC093909.1-201ENST00000504731 1122 ntBASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 GPC2-201ENST00000292377 2532 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.06■□□□□ 0.64
PAAF1Q9BRP4 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 AC022898.2-201ENST00000616822 1312 ntBASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 CALM1-205ENST00000553542 877 ntTSL 5 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 MTDHP4-201ENST00000600287 670 ntBASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 AC023511.2-201ENST00000618803 211 ntBASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 AD001527.2-201ENST00000622994 785 ntBASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 AL139288.1-201ENST00000623748 933 ntBASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
PAAF1Q9BRP4 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 PON3-205ENST00000451904 1053 ntTSL 3 BASIC19.04■□□□□ 0.64
PAAF1Q9BRP4 BX005266.1-201ENST00000473402 457 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms