Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 PIF1-205ENST00000559239 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
SPENQ96T58 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.07■□□□□ 0.16
SPENQ96T58 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 BX005266.1-201ENST00000473402 457 ntBASIC16.07■□□□□ 0.16
SPENQ96T58 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.07■□□□□ 0.16
SPENQ96T58 AC136632.2-201ENST00000512891 861 ntBASIC16.07■□□□□ 0.16
SPENQ96T58 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC16.07■□□□□ 0.16
SPENQ96T58 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
SPENQ96T58 AP002472.1-201ENST00000577490 586 ntBASIC16.07■□□□□ 0.16
SPENQ96T58 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
SPENQ96T58 GPR89P-201ENST00000407924 1495 ntBASIC16.07■□□□□ 0.16
SPENQ96T58 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.07■□□□□ 0.16
SPENQ96T58 SPDYE21P-201ENST00000413323 827 ntBASIC16.07■□□□□ 0.16
SPENQ96T58 AC109322.1-201ENST00000524499 1264 ntBASIC16.07■□□□□ 0.16
SPENQ96T58 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.07■□□□□ 0.16
SPENQ96T58 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.07■□□□□ 0.16
SPENQ96T58 GCOM1-202ENST00000380569 1846 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
SPENQ96T58 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC16.07■□□□□ 0.16
SPENQ96T58 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC16.07■□□□□ 0.16
SPENQ96T58 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
SPENQ96T58 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
SPENQ96T58 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
SPENQ96T58 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SPENQ96T58 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.06■□□□□ 0.16
SPENQ96T58 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.06■□□□□ 0.16
SPENQ96T58 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 HCG4B-203ENST00000450128 991 ntBASIC16.06■□□□□ 0.16
SPENQ96T58 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
SPENQ96T58 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.06■□□□□ 0.16
SPENQ96T58 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SPENQ96T58 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
SPENQ96T58 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 MYLKP1-201ENST00000509077 1580 ntBASIC16.06■□□□□ 0.16
SPENQ96T58 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 CTSA-201ENST00000191018 1898 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.06■□□□□ 0.16
SPENQ96T58 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
SPENQ96T58 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC16.06■□□□□ 0.16
SPENQ96T58 MIR770-201ENST00000390219 98 ntBASIC16.06■□□□□ 0.16
SPENQ96T58 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.06■□□□□ 0.16
SPENQ96T58 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
SPENQ96T58 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 KRT18P28-201ENST00000453838 1332 ntBASIC16.06■□□□□ 0.16
SPENQ96T58 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.06■□□□□ 0.16
SPENQ96T58 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC16.06■□□□□ 0.16
SPENQ96T58 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
SPENQ96T58 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.06■□□□□ 0.16
SPENQ96T58 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.06■□□□□ 0.16
SPENQ96T58 AC018845.2-201ENST00000568326 409 ntBASIC16.06■□□□□ 0.16
SPENQ96T58 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.06■□□□□ 0.16
SPENQ96T58 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
SPENQ96T58 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC16.06■□□□□ 0.16
SPENQ96T58 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC16.05■□□□□ 0.16
SPENQ96T58 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC16.05■□□□□ 0.16
SPENQ96T58 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
SPENQ96T58 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SPENQ96T58 AC005593.1-201ENST00000624894 515 ntBASIC16.05■□□□□ 0.16
SPENQ96T58 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SPENQ96T58 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
SPENQ96T58 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.05■□□□□ 0.16
SPENQ96T58 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.05■□□□□ 0.16
SPENQ96T58 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC16.05■□□□□ 0.16
SPENQ96T58 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.05■□□□□ 0.16
SPENQ96T58 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
SPENQ96T58 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.05■□□□□ 0.16
SPENQ96T58 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC16.05■□□□□ 0.16
SPENQ96T58 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC16.05■□□□□ 0.16
SPENQ96T58 PHGDH-209ENST00000641074 1780 ntBASIC16.05■□□□□ 0.16
SPENQ96T58 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SPENQ96T58 TMEM216-203ENST00000515837 1958 ntAPPRIS P2 TSL 2 BASIC16.05■□□□□ 0.16
SPENQ96T58 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.05■□□□□ 0.16
SPENQ96T58 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SPENQ96T58 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SPENQ96T58 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
SPENQ96T58 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC16.05■□□□□ 0.16
SPENQ96T58 ADH5P3-201ENST00000433842 1137 ntBASIC16.05■□□□□ 0.16
SPENQ96T58 AC023141.5-201ENST00000458585 616 ntBASIC16.05■□□□□ 0.16
SPENQ96T58 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms