Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 EML3-217ENST00000531557 2509 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 VENTXP7-201ENST00000475503 772 ntBASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 AP000867.3-201ENST00000524675 377 ntBASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 MPI-205ENST00000562606 1052 ntTSL 3 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC16.92■□□□□ 0.3
PTCHD1Q96NR3 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 REXO1L9P-201ENST00000604264 2108 ntBASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
PTCHD1Q96NR3 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 OR6D1P-202ENST00000641007 5290 ntBASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 MTCL1P1-201ENST00000446207 792 ntBASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 MIR3652-201ENST00000579335 131 ntBASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 Z69720.1-201ENST00000601483 472 ntBASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
PTCHD1Q96NR3 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
PTCHD1Q96NR3 AC233702.3-201ENST00000578656 1387 ntBASIC16.89■□□□□ 0.3
PTCHD1Q96NR3 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
PTCHD1Q96NR3 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC16.89■□□□□ 0.3
PTCHD1Q96NR3 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
PTCHD1Q96NR3 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
PTCHD1Q96NR3 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
PTCHD1Q96NR3 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms