Protein–RNA interactions for Protein: Q96HC4

PDLIM5, PDZ and LIM domain protein 5, humanhuman

Known RBP Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5Q96HC4 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 LINC00304-203ENST00000565008 1864 ntBASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 BAALC-202ENST00000306391 243 ntTSL 5 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 BAALC-204ENST00000330955 222 ntTSL 5 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 DUX4L26-201ENST00000489078 1255 ntBASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 RN7SL850P-201ENST00000579959 291 ntBASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 AC083849.1-201ENST00000615227 514 ntBASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.52■□□□□ 0.4
PDLIM5Q96HC4 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM5Q96HC4 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM5Q96HC4 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.52■□□□□ 0.39
PDLIM5Q96HC4 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM5Q96HC4 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
PDLIM5Q96HC4 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
PDLIM5Q96HC4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 MTCL1P1-201ENST00000446207 792 ntBASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
PDLIM5Q96HC4 HLA-J-201ENST00000462773 1622 ntBASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 IMP4-201ENST00000259239 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 AL138688.1-201ENST00000624851 1594 ntBASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 RNF126P1-202ENST00000569893 925 ntBASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 REXO1L11P-201ENST00000620964 1927 ntBASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
PDLIM5Q96HC4 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC17.49■□□□□ 0.39
PDLIM5Q96HC4 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM5Q96HC4 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM5Q96HC4 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.49■□□□□ 0.39
PDLIM5Q96HC4 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
PDLIM5Q96HC4 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms