Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.04■□□□□ 0.64
USP41Q3LFD5 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
USP41Q3LFD5 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 RPS2P1-201ENST00000434010 821 ntBASIC19.03■□□□□ 0.64
USP41Q3LFD5 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 ZNF259P1-201ENST00000407656 1365 ntBASIC19.03■□□□□ 0.64
USP41Q3LFD5 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC19.03■□□□□ 0.64
USP41Q3LFD5 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
USP41Q3LFD5 CD19-202ENST00000538922 1957 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 OR7E14P-202ENST00000530490 1290 ntBASIC19.02■□□□□ 0.64
USP41Q3LFD5 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 AP000867.4-201ENST00000641616 219 ntBASIC19.02■□□□□ 0.64
USP41Q3LFD5 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
USP41Q3LFD5 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
USP41Q3LFD5 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.02■□□□□ 0.63
USP41Q3LFD5 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP41Q3LFD5 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.02■□□□□ 0.63
USP41Q3LFD5 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
USP41Q3LFD5 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP41Q3LFD5 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP41Q3LFD5 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
USP41Q3LFD5 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.63
USP41Q3LFD5 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
USP41Q3LFD5 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 HLA-J-201ENST00000462773 1622 ntBASIC19.01■□□□□ 0.63
USP41Q3LFD5 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 AC096633.1-201ENST00000422446 749 ntBASIC19.01■□□□□ 0.63
USP41Q3LFD5 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 NKAPP1-205ENST00000585790 367 ntBASIC19.01■□□□□ 0.63
USP41Q3LFD5 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
USP41Q3LFD5 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.01■□□□□ 0.63
USP41Q3LFD5 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
USP41Q3LFD5 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC19■□□□□ 0.63
USP41Q3LFD5 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 AC093010.1-201ENST00000473625 1624 ntBASIC19■□□□□ 0.63
USP41Q3LFD5 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 AC073592.3-201ENST00000625118 1834 ntBASIC19■□□□□ 0.63
USP41Q3LFD5 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
USP41Q3LFD5 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC19■□□□□ 0.63
USP41Q3LFD5 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19■□□□□ 0.63
USP41Q3LFD5 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms