Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 RCN1P1-201ENST00000400413 996 ntBASIC17.33■□□□□ 0.36
PCDH1Q08174 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDH1Q08174 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC17.33■□□□□ 0.36
PCDH1Q08174 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC17.33■□□□□ 0.36
PCDH1Q08174 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC17.33■□□□□ 0.36
PCDH1Q08174 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.33■□□□□ 0.36
PCDH1Q08174 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.33■□□□□ 0.36
PCDH1Q08174 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
PCDH1Q08174 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
PCDH1Q08174 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.36
PCDH1Q08174 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH1Q08174 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDH1Q08174 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 AC018470.1-201ENST00000624790 3129 ntBASIC17.32■□□□□ 0.36
PCDH1Q08174 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
PCDH1Q08174 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
PCDH1Q08174 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 COPE-203ENST00000351079 907 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH1Q08174 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 ARHGEF28-214ENST00000545377 6351 ntAPPRIS P3 TSL 5 BASIC17.32■□□□□ 0.36
PCDH1Q08174 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC17.32■□□□□ 0.36
PCDH1Q08174 AC004263.2-201ENST00000617183 678 ntBASIC17.32■□□□□ 0.36
PCDH1Q08174 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.32■□□□□ 0.36
PCDH1Q08174 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
PCDH1Q08174 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH1Q08174 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH1Q08174 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.31■□□□□ 0.36
PCDH1Q08174 AC112907.2-201ENST00000448639 330 ntBASIC17.31■□□□□ 0.36
PCDH1Q08174 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH1Q08174 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH1Q08174 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH1Q08174 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC17.31■□□□□ 0.36
PCDH1Q08174 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 AC100803.2-201ENST00000562459 1963 ntBASIC17.31■□□□□ 0.36
PCDH1Q08174 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC17.31■□□□□ 0.36
PCDH1Q08174 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.31■□□□□ 0.36
PCDH1Q08174 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
PCDH1Q08174 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.31■□□□□ 0.36
PCDH1Q08174 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 LINC00896-202ENST00000609602 2128 ntBASIC17.3■□□□□ 0.36
PCDH1Q08174 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PCDH1Q08174 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
PCDH1Q08174 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDH1Q08174 SPDYE13P-201ENST00000445314 798 ntBASIC17.3■□□□□ 0.36
PCDH1Q08174 AP003733.1-201ENST00000491725 852 ntBASIC17.3■□□□□ 0.36
PCDH1Q08174 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDH1Q08174 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.3■□□□□ 0.36
PCDH1Q08174 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.3■□□□□ 0.36
PCDH1Q08174 GPR32P1-201ENST00000601788 811 ntBASIC17.3■□□□□ 0.36
PCDH1Q08174 AC116407.2-201ENST00000613639 860 ntBASIC17.3■□□□□ 0.36
PCDH1Q08174 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
PCDH1Q08174 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
PCDH1Q08174 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms