Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.85□□□□□ -0.35
PRKDCP78527 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC12.85□□□□□ -0.35
PRKDCP78527 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC12.85□□□□□ -0.35
PRKDCP78527 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.85□□□□□ -0.35
PRKDCP78527 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC12.85□□□□□ -0.35
PRKDCP78527 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
PRKDCP78527 TSFM-210ENST00000550559 897 ntTSL 5 BASIC12.85□□□□□ -0.35
PRKDCP78527 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
PRKDCP78527 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
PRKDCP78527 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
PRKDCP78527 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC12.84□□□□□ -0.35
PRKDCP78527 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.84□□□□□ -0.35
PRKDCP78527 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.84□□□□□ -0.35
PRKDCP78527 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.84□□□□□ -0.35
PRKDCP78527 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC12.84□□□□□ -0.35
PRKDCP78527 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC12.84□□□□□ -0.35
PRKDCP78527 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC12.84□□□□□ -0.35
PRKDCP78527 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 AC006116.8-202ENST00000587620 1550 ntBASIC12.84□□□□□ -0.35
PRKDCP78527 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
PRKDCP78527 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 AC012676.1-201ENST00000574705 1949 ntBASIC12.84□□□□□ -0.35
PRKDCP78527 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 AL355306.1-201ENST00000415580 579 ntBASIC12.84□□□□□ -0.35
PRKDCP78527 RNA5SP423-201ENST00000517127 109 ntBASIC12.84□□□□□ -0.35
PRKDCP78527 TNNT1-209ENST00000587758 1016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC12.84□□□□□ -0.35
PRKDCP78527 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
PRKDCP78527 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC12.84□□□□□ -0.35
PRKDCP78527 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC12.84□□□□□ -0.35
PRKDCP78527 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC12.84□□□□□ -0.35
PRKDCP78527 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
PRKDCP78527 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC12.83□□□□□ -0.36
PRKDCP78527 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC12.83□□□□□ -0.36
PRKDCP78527 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC12.83□□□□□ -0.36
PRKDCP78527 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC12.83□□□□□ -0.36
PRKDCP78527 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC12.83□□□□□ -0.36
PRKDCP78527 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 MIR4538-201ENST00000581377 78 ntBASIC12.83□□□□□ -0.36
PRKDCP78527 CYB561-216ENST00000582297 897 ntTSL 3 BASIC12.83□□□□□ -0.36
PRKDCP78527 GPR182-203ENST00000622922 591 ntBASIC12.83□□□□□ -0.36
PRKDCP78527 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC12.83□□□□□ -0.36
PRKDCP78527 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC12.83□□□□□ -0.36
PRKDCP78527 AC125437.2-201ENST00000625180 2167 ntBASIC12.83□□□□□ -0.36
PRKDCP78527 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC12.83□□□□□ -0.36
PRKDCP78527 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC12.83□□□□□ -0.36
PRKDCP78527 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
PRKDCP78527 MIR658-201ENST00000385210 100 ntBASIC12.83□□□□□ -0.36
PRKDCP78527 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC12.83□□□□□ -0.36
PRKDCP78527 KRT17P8-201ENST00000540749 863 ntBASIC12.83□□□□□ -0.36
PRKDCP78527 AC140878.1-201ENST00000565277 250 ntBASIC12.83□□□□□ -0.36
PRKDCP78527 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC12.83□□□□□ -0.36
PRKDCP78527 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC12.83□□□□□ -0.36
PRKDCP78527 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC12.83□□□□□ -0.36
PRKDCP78527 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC12.83□□□□□ -0.36
PRKDCP78527 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC12.82□□□□□ -0.36
PRKDCP78527 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
PRKDCP78527 AC092658.1-201ENST00000505836 891 ntBASIC12.82□□□□□ -0.36
PRKDCP78527 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC12.82□□□□□ -0.36
PRKDCP78527 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC12.82□□□□□ -0.36
PRKDCP78527 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms