Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
FOXA3P55318 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC13.5□□□□□ -0.25
FOXA3P55318 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 AF201337.1-201ENST00000520239 748 ntBASIC13.5□□□□□ -0.25
FOXA3P55318 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
FOXA3P55318 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA3P55318 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA3P55318 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 AC099343.3-201ENST00000605834 2503 ntBASIC13.5□□□□□ -0.25
FOXA3P55318 SERTM1-201ENST00000315190 3207 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
FOXA3P55318 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA3P55318 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
FOXA3P55318 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC13.5□□□□□ -0.25
FOXA3P55318 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC13.5□□□□□ -0.25
FOXA3P55318 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
FOXA3P55318 AC093010.1-201ENST00000473625 1624 ntBASIC13.5□□□□□ -0.25
FOXA3P55318 AC010198.1-201ENST00000500076 1552 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 AC092368.3-202ENST00000574180 1591 ntBASIC13.49□□□□□ -0.25
FOXA3P55318 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
FOXA3P55318 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC13.49□□□□□ -0.25
FOXA3P55318 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
FOXA3P55318 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC13.49□□□□□ -0.25
FOXA3P55318 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC13.49□□□□□ -0.25
FOXA3P55318 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC13.49□□□□□ -0.25
FOXA3P55318 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
FOXA3P55318 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.49□□□□□ -0.25
FOXA3P55318 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA3P55318 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA3P55318 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC13.49□□□□□ -0.25
FOXA3P55318 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC13.49□□□□□ -0.25
FOXA3P55318 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC13.49□□□□□ -0.25
FOXA3P55318 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
FOXA3P55318 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.49□□□□□ -0.25
FOXA3P55318 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 AL355312.1-201ENST00000407115 2176 ntBASIC13.49□□□□□ -0.25
FOXA3P55318 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC13.49□□□□□ -0.25
FOXA3P55318 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 SP100-208ENST00000427101 1922 ntTSL 2 BASIC13.49□□□□□ -0.25
FOXA3P55318 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
FOXA3P55318 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC13.48□□□□□ -0.25
FOXA3P55318 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
FOXA3P55318 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA3P55318 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
FOXA3P55318 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA3P55318 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC13.48□□□□□ -0.25
FOXA3P55318 SLC29A4P2-201ENST00000504749 1089 ntBASIC13.48□□□□□ -0.25
FOXA3P55318 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC13.48□□□□□ -0.25
FOXA3P55318 MIR6821-201ENST00000617625 74 ntBASIC13.48□□□□□ -0.25
FOXA3P55318 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA3P55318 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
FOXA3P55318 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC13.48□□□□□ -0.25
FOXA3P55318 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
FOXA3P55318 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms