Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 INO80E-207ENST00000563197 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
VCPP55072 AC135776.1-201ENST00000319817 2481 ntBASIC19.2■□□□□ 0.66
VCPP55072 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
VCPP55072 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 KBTBD11-201ENST00000320248 6710 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC19.2■□□□□ 0.66
VCPP55072 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.2■□□□□ 0.66
VCPP55072 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
VCPP55072 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
VCPP55072 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.2■□□□□ 0.66
VCPP55072 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.2■□□□□ 0.66
VCPP55072 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC19.2■□□□□ 0.66
VCPP55072 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC19.2■□□□□ 0.66
VCPP55072 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
VCPP55072 KRT18P41-201ENST00000518924 1277 ntBASIC19.2■□□□□ 0.66
VCPP55072 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
VCPP55072 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC19.2■□□□□ 0.66
VCPP55072 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.2■□□□□ 0.66
VCPP55072 REXO1L6P-202ENST00000619970 1078 ntBASIC19.2■□□□□ 0.66
VCPP55072 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC19.2■□□□□ 0.66
VCPP55072 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC19.2■□□□□ 0.66
VCPP55072 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC19.2■□□□□ 0.66
VCPP55072 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
VCPP55072 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
VCPP55072 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.2■□□□□ 0.66
VCPP55072 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.19■□□□□ 0.66
VCPP55072 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC19.19■□□□□ 0.66
VCPP55072 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 AC073648.2-201ENST00000510116 352 ntBASIC19.19■□□□□ 0.66
VCPP55072 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC19.19■□□□□ 0.66
VCPP55072 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.19■□□□□ 0.66
VCPP55072 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.19■□□□□ 0.66
VCPP55072 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC19.19■□□□□ 0.66
VCPP55072 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 UBC-206ENST00000538617 1303 ntTSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 AL391807.1-203ENST00000604392 2365 ntBASIC19.19■□□□□ 0.66
VCPP55072 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC19.19■□□□□ 0.66
VCPP55072 MYLKP1-201ENST00000509077 1580 ntBASIC19.19■□□□□ 0.66
VCPP55072 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
VCPP55072 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
VCPP55072 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.18■□□□□ 0.66
VCPP55072 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.18■□□□□ 0.66
VCPP55072 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.18■□□□□ 0.66
VCPP55072 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VCPP55072 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.18■□□□□ 0.66
VCPP55072 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
VCPP55072 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.18■□□□□ 0.66
VCPP55072 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 AL031284.1-201ENST00000419297 478 ntBASIC19.18■□□□□ 0.66
VCPP55072 PMS2P2-201ENST00000425039 1128 ntBASIC19.18■□□□□ 0.66
VCPP55072 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC19.18■□□□□ 0.66
VCPP55072 RNPS1P1-201ENST00000507437 918 ntBASIC19.18■□□□□ 0.66
VCPP55072 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC19.18■□□□□ 0.66
VCPP55072 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
VCPP55072 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.18■□□□□ 0.66
VCPP55072 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
VCPP55072 AC027796.2-201ENST00000575326 344 ntBASIC19.18■□□□□ 0.66
VCPP55072 MIR3917-201ENST00000580971 93 ntBASIC19.18■□□□□ 0.66
VCPP55072 AC010240.3-201ENST00000607688 395 ntBASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms