Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 NKTR-203ENST00000442970 646 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC20.62■□□□□ 0.89
HMGCS2P54868 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 PGM5P2-202ENST00000637225 1043 ntBASIC20.62■□□□□ 0.89
HMGCS2P54868 AC134684.3-201ENST00000641758 218 ntBASIC20.62■□□□□ 0.89
HMGCS2P54868 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 ADM-208ENST00000534464 1640 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
HMGCS2P54868 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC20.62■□□□□ 0.89
HMGCS2P54868 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
HMGCS2P54868 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC20.62■□□□□ 0.89
HMGCS2P54868 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
HMGCS2P54868 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 ACP6-201ENST00000392988 1555 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HMGCS2P54868 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.61■□□□□ 0.89
HMGCS2P54868 COX5BP2-201ENST00000392354 334 ntBASIC20.61■□□□□ 0.89
HMGCS2P54868 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
HMGCS2P54868 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGCS2P54868 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGCS2P54868 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC20.61■□□□□ 0.89
HMGCS2P54868 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.61■□□□□ 0.89
HMGCS2P54868 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGCS2P54868 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
HMGCS2P54868 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGCS2P54868 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC20.61■□□□□ 0.89
HMGCS2P54868 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
HMGCS2P54868 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.61■□□□□ 0.89
HMGCS2P54868 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
HMGCS2P54868 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
HMGCS2P54868 SLC4A1APP2-201ENST00000424054 1259 ntBASIC20.6■□□□□ 0.89
HMGCS2P54868 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC20.6■□□□□ 0.89
HMGCS2P54868 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC20.6■□□□□ 0.89
HMGCS2P54868 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGCS2P54868 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 MED29-202ENST00000594368 1471 ntTSL 2 BASIC20.6■□□□□ 0.89
HMGCS2P54868 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGCS2P54868 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC20.6■□□□□ 0.89
HMGCS2P54868 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HMGCS2P54868 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGCS2P54868 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.59■□□□□ 0.89
HMGCS2P54868 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
HMGCS2P54868 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC20.59■□□□□ 0.89
HMGCS2P54868 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HMGCS2P54868 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
HMGCS2P54868 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGCS2P54868 PMS2P2-201ENST00000425039 1128 ntBASIC20.59■□□□□ 0.89
HMGCS2P54868 URGCP-206ENST00000446958 365 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGCS2P54868 KRT18P2-201ENST00000447938 1258 ntBASIC20.59■□□□□ 0.89
HMGCS2P54868 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 DUTP2-201ENST00000519164 463 ntBASIC20.59■□□□□ 0.89
HMGCS2P54868 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
HMGCS2P54868 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC20.59■□□□□ 0.89
HMGCS2P54868 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.59■□□□□ 0.89
HMGCS2P54868 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC20.59■□□□□ 0.89
HMGCS2P54868 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.59■□□□□ 0.89
HMGCS2P54868 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC20.59■□□□□ 0.89
HMGCS2P54868 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
HMGCS2P54868 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms