Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PCDHB17P-201ENST00000539533 2393 ntBASIC14.93□□□□□ -0.02
HOXA1P49639 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC14.93□□□□□ -0.02
HOXA1P49639 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
HOXA1P49639 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
HOXA1P49639 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXA1P49639 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC14.93□□□□□ -0.02
HOXA1P49639 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
HOXA1P49639 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
HOXA1P49639 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.92□□□□□ -0.02
HOXA1P49639 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC14.92□□□□□ -0.02
HOXA1P49639 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC14.92□□□□□ -0.02
HOXA1P49639 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 AL357033.4-201ENST00000617703 1807 ntBASIC14.92□□□□□ -0.02
HOXA1P49639 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
HOXA1P49639 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 DERL1-203ENST00000419562 918 ntTSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 AC026366.1-201ENST00000488803 879 ntBASIC14.92□□□□□ -0.02
HOXA1P49639 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC14.92□□□□□ -0.02
HOXA1P49639 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
HOXA1P49639 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
HOXA1P49639 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
HOXA1P49639 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.91□□□□□ -0.02
HOXA1P49639 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HOXA1P49639 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HOXA1P49639 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HOXA1P49639 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
HOXA1P49639 APTR-205ENST00000447009 902 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 AP002982.1-201ENST00000492365 877 ntBASIC14.91□□□□□ -0.02
HOXA1P49639 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 AC233263.1-201ENST00000578059 224 ntBASIC14.91□□□□□ -0.02
HOXA1P49639 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
HOXA1P49639 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 PRSS23-209ENST00000533902 2043 ntTSL 4 BASIC14.91□□□□□ -0.02
HOXA1P49639 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
HOXA1P49639 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 MROH1-202ENST00000423230 1712 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC14.91□□□□□ -0.02
HOXA1P49639 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
HOXA1P49639 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms