Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 AC005082.1-201ENST00000413042 2259 ntBASIC17.77■□□□□ 0.44
CXCL12P48061 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL12P48061 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CXCL12P48061 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC17.77■□□□□ 0.44
CXCL12P48061 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
CXCL12P48061 CALY-203ENST00000368558 825 ntTSL 5 BASIC17.77■□□□□ 0.44
CXCL12P48061 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.77■□□□□ 0.44
CXCL12P48061 ATP6V0CP3-201ENST00000417255 467 ntBASIC17.77■□□□□ 0.44
CXCL12P48061 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.44
CXCL12P48061 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.77■□□□□ 0.44
CXCL12P48061 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.77■□□□□ 0.44
CXCL12P48061 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC17.77■□□□□ 0.44
CXCL12P48061 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC17.77■□□□□ 0.44
CXCL12P48061 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.77■□□□□ 0.44
CXCL12P48061 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC17.77■□□□□ 0.44
CXCL12P48061 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
CXCL12P48061 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
CXCL12P48061 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
CXCL12P48061 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.77■□□□□ 0.43
CXCL12P48061 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CXCL12P48061 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CXCL12P48061 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC17.76■□□□□ 0.43
CXCL12P48061 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC17.76■□□□□ 0.43
CXCL12P48061 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.76■□□□□ 0.43
CXCL12P48061 AL031432.2-201ENST00000566714 459 ntBASIC17.76■□□□□ 0.43
CXCL12P48061 AL928711.1-201ENST00000570165 459 ntBASIC17.76■□□□□ 0.43
CXCL12P48061 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.76■□□□□ 0.43
CXCL12P48061 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
CXCL12P48061 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
CXCL12P48061 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CXCL12P48061 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 AL353593.2-201ENST00000602529 1483 ntBASIC17.75■□□□□ 0.43
CXCL12P48061 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CXCL12P48061 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC17.75■□□□□ 0.43
CXCL12P48061 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
CXCL12P48061 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.75■□□□□ 0.43
CXCL12P48061 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CXCL12P48061 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC17.75■□□□□ 0.43
CXCL12P48061 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CXCL12P48061 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CXCL12P48061 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.75■□□□□ 0.43
CXCL12P48061 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.75■□□□□ 0.43
CXCL12P48061 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC17.75■□□□□ 0.43
CXCL12P48061 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 SIGLEC30P-201ENST00000455569 941 ntBASIC17.75■□□□□ 0.43
CXCL12P48061 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 PUS1-205ENST00000535067 838 ntTSL 3 BASIC17.75■□□□□ 0.43
CXCL12P48061 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.75■□□□□ 0.43
CXCL12P48061 AC004877.2-201ENST00000623941 599 ntBASIC17.75■□□□□ 0.43
CXCL12P48061 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
CXCL12P48061 SAMD11-216ENST00000620200 1874 ntTSL 5 BASIC17.75■□□□□ 0.43
CXCL12P48061 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
CXCL12P48061 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CXCL12P48061 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
CXCL12P48061 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CXCL12P48061 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CXCL12P48061 SIRPAP1-201ENST00000448467 1770 ntBASIC17.74■□□□□ 0.43
CXCL12P48061 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 70.8 ms