Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.18■□□□□ 0.5
HADHAP40939 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
HADHAP40939 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HADHAP40939 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HADHAP40939 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HADHAP40939 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC18.17■□□□□ 0.5
HADHAP40939 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC18.17■□□□□ 0.5
HADHAP40939 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.17■□□□□ 0.5
HADHAP40939 HLA-F-220ENST00000434407 884 ntBASIC18.17■□□□□ 0.5
HADHAP40939 AL359075.1-203ENST00000462729 1002 ntBASIC18.17■□□□□ 0.5
HADHAP40939 DUX4L26-201ENST00000489078 1255 ntBASIC18.17■□□□□ 0.5
HADHAP40939 AC113404.2-201ENST00000507884 177 ntBASIC18.17■□□□□ 0.5
HADHAP40939 FGF14-AS2-201ENST00000606448 1074 ntBASIC18.17■□□□□ 0.5
HADHAP40939 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HADHAP40939 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.17■□□□□ 0.5
HADHAP40939 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HADHAP40939 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.16■□□□□ 0.5
HADHAP40939 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
HADHAP40939 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HADHAP40939 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC18.16■□□□□ 0.5
HADHAP40939 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC18.16■□□□□ 0.5
HADHAP40939 AC022616.7-201ENST00000525383 220 ntBASIC18.16■□□□□ 0.5
HADHAP40939 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.16■□□□□ 0.5
HADHAP40939 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
HADHAP40939 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.16■□□□□ 0.5
HADHAP40939 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC18.16■□□□□ 0.5
HADHAP40939 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
HADHAP40939 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HADHAP40939 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HADHAP40939 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC18.15■□□□□ 0.5
HADHAP40939 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC18.15■□□□□ 0.5
HADHAP40939 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HADHAP40939 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC18.15■□□□□ 0.5
HADHAP40939 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 AC112907.2-201ENST00000448639 330 ntBASIC18.15■□□□□ 0.5
HADHAP40939 KRT18P38-201ENST00000449496 1282 ntBASIC18.15■□□□□ 0.5
HADHAP40939 AC099518.3-201ENST00000564808 809 ntAPPRIS P5 TSL 4 BASIC18.15■□□□□ 0.5
HADHAP40939 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.15■□□□□ 0.5
HADHAP40939 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
HADHAP40939 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
HADHAP40939 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
HADHAP40939 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC18.15■□□□□ 0.5
HADHAP40939 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
HADHAP40939 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC18.15■□□□□ 0.5
HADHAP40939 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms