Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
MSH3P20585 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC17.88■□□□□ 0.45
MSH3P20585 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
MSH3P20585 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
MSH3P20585 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH3P20585 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH3P20585 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC17.87■□□□□ 0.45
MSH3P20585 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC17.87■□□□□ 0.45
MSH3P20585 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC17.87■□□□□ 0.45
MSH3P20585 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC17.87■□□□□ 0.45
MSH3P20585 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
MSH3P20585 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH3P20585 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.87■□□□□ 0.45
MSH3P20585 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH3P20585 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.87■□□□□ 0.45
MSH3P20585 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC17.87■□□□□ 0.45
MSH3P20585 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH3P20585 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
MSH3P20585 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
MSH3P20585 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH3P20585 KRT18P65-201ENST00000439811 1286 ntBASIC17.86■□□□□ 0.45
MSH3P20585 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH3P20585 GUSBP12-201ENST00000513727 720 ntBASIC17.86■□□□□ 0.45
MSH3P20585 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC17.86■□□□□ 0.45
MSH3P20585 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH3P20585 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC17.86■□□□□ 0.45
MSH3P20585 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.86■□□□□ 0.45
MSH3P20585 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 AC132938.6-201ENST00000623828 1655 ntBASIC17.86■□□□□ 0.45
MSH3P20585 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
MSH3P20585 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC17.86■□□□□ 0.45
MSH3P20585 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC17.85■□□□□ 0.45
MSH3P20585 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC17.85■□□□□ 0.45
MSH3P20585 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC17.85■□□□□ 0.45
MSH3P20585 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 PDCD6-207ENST00000509581 1156 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
MSH3P20585 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
MSH3P20585 AC008764.6-201ENST00000595909 2069 ntBASIC17.85■□□□□ 0.45
MSH3P20585 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 IGHV3-41-201ENST00000613121 348 ntBASIC17.85■□□□□ 0.45
MSH3P20585 VPS72-207ENST00000640458 689 ntTSL 5 BASIC17.85■□□□□ 0.45
MSH3P20585 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.85■□□□□ 0.45
MSH3P20585 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
MSH3P20585 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH3P20585 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH3P20585 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC17.84■□□□□ 0.45
MSH3P20585 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
MSH3P20585 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC17.84■□□□□ 0.45
MSH3P20585 AC022898.2-201ENST00000616822 1312 ntBASIC17.84■□□□□ 0.45
MSH3P20585 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC17.84■□□□□ 0.45
MSH3P20585 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 67.1 ms