Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 KRT8P45-201ENST00000414328 1447 ntBASIC17.37■□□□□ 0.37
LDLRP01130 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.37■□□□□ 0.37
LDLRP01130 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
LDLRP01130 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
LDLRP01130 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC17.37■□□□□ 0.37
LDLRP01130 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
LDLRP01130 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.36■□□□□ 0.37
LDLRP01130 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
LDLRP01130 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 AL359075.1-203ENST00000462729 1002 ntBASIC17.36■□□□□ 0.37
LDLRP01130 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.36■□□□□ 0.37
LDLRP01130 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC17.36■□□□□ 0.37
LDLRP01130 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
LDLRP01130 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
LDLRP01130 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
LDLRP01130 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.36■□□□□ 0.37
LDLRP01130 AC008556.1-201ENST00000610908 2040 ntBASIC17.36■□□□□ 0.37
LDLRP01130 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.36■□□□□ 0.37
LDLRP01130 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.36■□□□□ 0.37
LDLRP01130 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.36■□□□□ 0.37
LDLRP01130 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
LDLRP01130 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
LDLRP01130 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
LDLRP01130 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC17.35■□□□□ 0.37
LDLRP01130 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC17.35■□□□□ 0.37
LDLRP01130 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
LDLRP01130 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC17.35■□□□□ 0.37
LDLRP01130 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
LDLRP01130 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.35■□□□□ 0.37
LDLRP01130 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC17.35■□□□□ 0.37
LDLRP01130 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
LDLRP01130 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.35■□□□□ 0.37
LDLRP01130 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.35■□□□□ 0.37
LDLRP01130 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.35■□□□□ 0.37
LDLRP01130 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.35■□□□□ 0.37
LDLRP01130 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.35■□□□□ 0.37
LDLRP01130 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.35■□□□□ 0.37
LDLRP01130 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
LDLRP01130 AC092338.2-201ENST00000568827 1415 ntBASIC17.35■□□□□ 0.37
LDLRP01130 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.35■□□□□ 0.37
LDLRP01130 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.35■□□□□ 0.37
LDLRP01130 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
LDLRP01130 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDLRP01130 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
LDLRP01130 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDLRP01130 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDLRP01130 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDLRP01130 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
LDLRP01130 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.34■□□□□ 0.37
LDLRP01130 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDLRP01130 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDLRP01130 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
LDLRP01130 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.34■□□□□ 0.37
LDLRP01130 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
LDLRP01130 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms