Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4BO75351 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
VPS4BO75351 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 AC012317.2-201ENST00000623305 2251 ntBASIC17.63■□□□□ 0.41
VPS4BO75351 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4BO75351 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4BO75351 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4BO75351 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4BO75351 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4BO75351 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.62■□□□□ 0.41
VPS4BO75351 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VPS4BO75351 KIRREL3-AS3-201ENST00000404882 831 ntBASIC17.62■□□□□ 0.41
VPS4BO75351 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4BO75351 AC007663.1-201ENST00000438948 1240 ntBASIC17.62■□□□□ 0.41
VPS4BO75351 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VPS4BO75351 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.62■□□□□ 0.41
VPS4BO75351 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VPS4BO75351 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VPS4BO75351 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VPS4BO75351 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4BO75351 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4BO75351 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4BO75351 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4BO75351 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS4BO75351 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS4BO75351 NME9-203ENST00000383180 2133 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS4BO75351 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VPS4BO75351 AL359075.1-203ENST00000462729 1002 ntBASIC17.61■□□□□ 0.41
VPS4BO75351 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS4BO75351 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS4BO75351 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VPS4BO75351 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS4BO75351 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS4BO75351 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
VPS4BO75351 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4BO75351 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS4BO75351 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
VPS4BO75351 APOLD1-202ENST00000356591 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS4BO75351 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
VPS4BO75351 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
VPS4BO75351 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS4BO75351 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
VPS4BO75351 TSPY17P-201ENST00000450329 467 ntBASIC17.6■□□□□ 0.41
VPS4BO75351 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS4BO75351 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS4BO75351 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS4BO75351 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS4BO75351 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS4BO75351 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 ASL-204ENST00000395331 1538 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS4BO75351 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4BO75351 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms