Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 CNN2P11-201ENST00000429351 262 ntBASIC30.86■■■□□ 2.53
CCDC88BA6NC98 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 AL031432.2-201ENST00000566714 459 ntBASIC30.86■■■□□ 2.53
CCDC88BA6NC98 AL928711.1-201ENST00000570165 459 ntBASIC30.86■■■□□ 2.53
CCDC88BA6NC98 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 STK25P1-201ENST00000585406 838 ntBASIC30.86■■■□□ 2.53
CCDC88BA6NC98 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CCDC88BA6NC98 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 TMED1-207ENST00000591695 809 ntTSL 5 BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 AC100803.2-201ENST00000562459 1963 ntBASIC30.85■■■□□ 2.53
CCDC88BA6NC98 AC018445.3-201ENST00000624177 1945 ntBASIC30.85■■■□□ 2.53
CCDC88BA6NC98 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
CCDC88BA6NC98 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
CCDC88BA6NC98 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 NSUN5P2-205ENST00000602348 1776 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC30.83■■■□□ 2.53
CCDC88BA6NC98 CD82-202ENST00000342935 967 ntTSL 5 BASIC30.82■■■□□ 2.53
CCDC88BA6NC98 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC30.82■■■□□ 2.53
CCDC88BA6NC98 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC30.82■■■□□ 2.53
CCDC88BA6NC98 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
CCDC88BA6NC98 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC30.82■■■□□ 2.53
CCDC88BA6NC98 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC30.82■■■□□ 2.53
CCDC88BA6NC98 PC-214ENST00000628663 1470 ntTSL 5 BASIC30.82■■■□□ 2.52
CCDC88BA6NC98 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CCDC88BA6NC98 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CCDC88BA6NC98 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC30.82■■■□□ 2.52
CCDC88BA6NC98 PON3-203ENST00000427422 894 ntTSL 3 BASIC30.82■■■□□ 2.52
CCDC88BA6NC98 RHOQP3-201ENST00000437982 621 ntBASIC30.82■■■□□ 2.52
CCDC88BA6NC98 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
CCDC88BA6NC98 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC30.82■■■□□ 2.52
CCDC88BA6NC98 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 HARS-201ENST00000307633 1780 ntTSL 2 BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 ATP6V0CP3-201ENST00000417255 467 ntBASIC30.81■■■□□ 2.52
CCDC88BA6NC98 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 KRT19P2-202ENST00000557173 1012 ntBASIC30.81■■■□□ 2.52
CCDC88BA6NC98 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 AL353135.1-201ENST00000606729 504 ntBASIC30.81■■■□□ 2.52
CCDC88BA6NC98 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CCDC88BA6NC98 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC30.8■■■□□ 2.52
CCDC88BA6NC98 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC30.8■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms