Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 KRT126P-201ENST00000549467 1181 ntBASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 ABALON-201ENST00000629058 1903 ntBASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 AP000997.3-201ENST00000623333 2250 ntBASIC19.21■□□□□ 0.67
SNX9Q9Y5X1 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.66
SNX9Q9Y5X1 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
SNX9Q9Y5X1 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.66
SNX9Q9Y5X1 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 NEFHP1-201ENST00000412845 2629 ntBASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SNX9Q9Y5X1 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 AL450487.1-201ENST00000426799 995 ntBASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 NFATC4-223ENST00000555802 1476 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SNX9Q9Y5X1 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms