Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 CNP-204ENST00000472031 1019 ntTSL 2 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 HCG11-201ENST00000411553 5696 ntBASIC23.06■■□□□ 1.28
SMC4Q9NTJ3 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 RMI2-205ENST00000576027 818 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 AC134043.2-201ENST00000624206 2238 ntBASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 AR-207ENST00000612010 3896 ntTSL 5 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC23.05■■□□□ 1.28
SMC4Q9NTJ3 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 MAEA-219ENST00000514708 1945 ntTSL 2 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 KRT8P47-201ENST00000604727 1398 ntBASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 PCED1CP-201ENST00000419887 785 ntBASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SMC4Q9NTJ3 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 ARMC10P1-201ENST00000313754 855 ntBASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 AC116407.4-201ENST00000623319 1061 ntBASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SMC4Q9NTJ3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
SMC4Q9NTJ3 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC23.02■■□□□ 1.28
SMC4Q9NTJ3 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SMC4Q9NTJ3 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC23.02■■□□□ 1.28
SMC4Q9NTJ3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC23.02■■□□□ 1.28
SMC4Q9NTJ3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SMC4Q9NTJ3 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms