Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 GTF2IRD2-207ENST00000625377 1910 ntTSL 5 BASIC15.51■□□□□ 0.07
CHMP1AQ9HD42 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 GMCL1P1-201ENST00000463439 1581 ntBASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 BUB3-202ENST00000368859 667 ntTSL 3 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 FAM197Y1-201ENST00000421178 764 ntBASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 CFL2-205ENST00000555765 632 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 SLC25A1P4-201ENST00000567977 778 ntBASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 SPIB-206ENST00000596074 847 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 MMD2-204ENST00000612910 778 ntTSL 5 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 POR-209ENST00000439269 1858 ntTSL 2 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC15.5■□□□□ 0.07
CHMP1AQ9HD42 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 AL513477.1-201ENST00000602865 2407 ntBASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 MIR564-202ENST00000385049 94 ntBASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 AP000692.2-201ENST00000608391 879 ntBASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 AC068418.2-201ENST00000577309 3703 ntBASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
CHMP1AQ9HD42 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 43.1 ms