Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC092902.6-201ENST00000641783 218 ntBASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC21.4■■□□□ 1.02
ZNF541Q9H0D2 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.39■■□□□ 1.02
ZNF541Q9H0D2 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
ZNF541Q9H0D2 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 MRPL20P1-201ENST00000400819 433 ntBASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 ACTG1P14-201ENST00000446382 1122 ntBASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 TAF8-206ENST00000472818 719 ntTSL 2 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 OR7E47P-204ENST00000575924 449 ntBASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 AC025580.3-201ENST00000617932 1424 ntBASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 AL353593.2-201ENST00000602529 1483 ntBASIC21.39■■□□□ 1.01
ZNF541Q9H0D2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 RHOQP3-201ENST00000437982 621 ntBASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 PON3-205ENST00000451904 1053 ntTSL 3 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 AL805961.1-202ENST00000641562 540 ntBASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.38■■□□□ 1.01
ZNF541Q9H0D2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 AC103564.2-201ENST00000432853 1299 ntBASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 AC074386.1-202ENST00000463561 864 ntBASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 PUDP-206ENST00000540122 825 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 TK1-204ENST00000590430 683 ntTSL 3 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 AL390955.2-201ENST00000603032 514 ntBASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 AC105339.1-204ENST00000636249 355 ntBASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC21.37■■□□□ 1.01
ZNF541Q9H0D2 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
ZNF541Q9H0D2 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.36■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms