Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CCDC28BQ9BUN5 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 AL596257.1-201ENST00000641463 2694 ntBASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 SLC25A1P4-201ENST00000567977 778 ntBASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 AC073648.6-201ENST00000641589 218 ntBASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 CROCCP2-202ENST00000412962 2773 ntBASIC17.49■□□□□ 0.39
CCDC28BQ9BUN5 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 MIR3180-4-201ENST00000582223 153 ntBASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 SYNE4-201ENST00000324444 1354 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CCDC28BQ9BUN5 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 LRRC23-209ENST00000443597 1628 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.47■□□□□ 0.39
CCDC28BQ9BUN5 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms